Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 1.2e-104 383.3 203 100.0
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 1.5e-102 376.3 203 98.5
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 1.8e-100 369.4 206 96.1
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 2.3e-84 315.8 221 82.4
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.1e-84 315.5 217 82.0
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 5.0e-79 298.1 220 77.3
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 3.0e-71 272.3 217 71.0
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.8e-69 265.8 217 70.0
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.8e-69 265.8 217 70.0
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 1.4e-68 263.5 204 73.5
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 5.2e-68 261.5 226 67.3
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 1.5e-67 260.0 178 76.4
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 2.0e-67 259.6 200 72.0
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 3.4e-67 258.8 200 75.0
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 4.4e-67 258.5 182 74.7
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.2e-66 256.1 176 77.8
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 4.9e-66 255.0 176 77.3
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.9e-66 255.0 176 77.3
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 4.9e-66 255.0 204 70.6
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 8.4e-66 254.2 200 70.0
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.4e-65 253.4 203 70.4
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 2.4e-65 252.7 191 71.2
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 3.2e-65 252.3 203 70.0
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 4.1e-65 251.9 220 66.8
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 9.2e-65 250.8 203 70.0
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 9.2e-65 250.8 205 68.3
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 1.2e-64 250.4 220 64.5
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.2e-64 250.4 171 75.4
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 3.5e-64 248.8 193 70.5
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 4.6e-64 248.4 210 65.7
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 4.6e-64 248.4 216 65.7
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 6.0e-64 248.1 199 69.3
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 1.0e-63 247.3 211 66.8
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 1.0e-63 247.3 198 69.7
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 1.0e-63 247.3 193 70.5
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 1.7e-63 246.5 182 73.6
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 2.3e-63 246.1 181 74.0
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 6.6e-63 244.6 206 68.4
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 6.6e-63 244.6 182 74.7
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 8.6e-63 244.2 181 73.5
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 1.5e-62 243.4 179 75.4
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.9e-62 243.0 182 72.0
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 2.5e-62 242.7 206 70.4
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 7.3e-62 241.1 185 71.4
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 1.2e-61 240.4 179 72.1
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 2.1e-61 239.6 183 73.2
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 3.6e-61 238.8 184 71.2
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 8.1e-61 237.7 188 72.3
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 1.4e-60 236.9 179 73.7
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 1.4e-60 236.9 179 73.7
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 1.4e-60 236.9 179 73.7
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 1.4e-60 236.9 212 67.5
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 1.4e-60 236.9 178 75.3
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 1.8e-60 236.5 151 84.1
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 1.8e-60 236.5 188 71.3
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 5.2e-60 235.0 179 73.2
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 6.8e-60 234.6 213 67.1
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 6.8e-60 234.6 181 73.5
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 8.9e-60 234.2 156 80.1
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 1.2e-59 233.8 180 75.0
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 1.2e-59 233.8 204 66.2
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 1.5e-59 233.4 212 64.6
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 1.5e-59 233.4 221 62.4
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 2.0e-59 233.0 197 70.6
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 2.0e-59 233.0 214 66.4
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 3.4e-59 232.3 179 73.2
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 3.4e-59 232.3 179 72.1
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 3.4e-59 232.3 166 75.3
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 4.4e-59 231.9 213 66.7
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 4.4e-59 231.9 191 67.5
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 5.8e-59 231.5 156 81.4
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 9.9e-59 230.7 200 65.0
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 2.9e-58 229.2 178 74.2
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 1.4e-57 226.9 180 71.7
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 2.4e-57 226.1 220 61.4
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 1.6e-56 223.4 199 66.3
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 4.6e-56 221.9 148 79.1
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 1.3e-55 220.3 201 63.7
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 6.6e-55 218.0 178 68.0
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 9.6e-54 214.2 196 65.8
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 1.3e-53 213.8 190 65.8
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 6.9e-52 208.0 206 59.7
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 9.0e-52 207.6 178 69.7
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 2.0e-51 206.5 178 69.1
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 4.4e-51 205.3 208 58.7
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 1.1e-49 200.7 199 61.3
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 3.2e-49 199.1 166 68.1
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 7.3e-46 188.0 215 57.2
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 8.1e-45 184.5 150 67.3
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 4.2e-41 172.2 157 64.3
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 7.1e-41 171.4 212 54.7
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 2.3e-39 166.4 164 58.5
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 3.0e-39 166.0 172 56.4
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 8.7e-39 164.5 118 74.6
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 1.9e-38 163.3 107 81.3
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 3.3e-38 162.5 108 76.9
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 5.9e-27 125.2 82 81.7
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 3.8e-26 122.5 82 80.5
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 3.9e-23 112.5 105 61.0
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 1.1e-22 110.9 177 39.5
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.3e-21 107.5 74 75.7
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 2.2e-21 106.7 89 62.9
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 4.8e-21 105.5 103 62.1
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 9.0e-20 101.3 77 68.8
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 2.1e-16 90.1 58 82.8
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 1.0e-15 87.8 112 42.9
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 6.5e-10 68.6 48 72.9
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 8.5e-10 68.2 46 76.1
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 9.4e-09 64.7 103 40.8
Sc03g0008980 Simmondsia chinensis HOM05D007184 ORTHO05D008987 3.6e-08 62.8 43 72.1
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 4.7e-08 62.4 102 36.3
FAN06G0875 Fragaria x ananassa HOM05D007184 ORTHO05D008987 9.7e-06 54.7 37 73.0


User provided reference genes

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