Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 2.2e-168 595.5 293 100.0
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 2.2e-168 595.5 293 100.0
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 3.6e-163 578.2 293 97.3
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 2.7e-150 535.4 293 89.1
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 6.7e-149 530.8 293 89.1
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.5e-148 529.6 293 88.7
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 1.6e-134 483.0 299 79.3
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 1.4e-133 479.9 300 79.3
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 5.1e-133 478.0 300 79.0
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 2.0e-132 476.1 300 78.7
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 2.8e-131 472.2 299 77.3
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 8.2e-131 470.7 299 76.9
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 3.1e-130 468.8 296 79.4
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.2e-129 466.8 295 78.3
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 2.6e-129 465.7 291 79.0
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 3.4e-129 465.3 296 78.0
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.4e-127 459.9 293 76.5
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 9.4e-127 457.2 295 75.9
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 3.6e-126 455.3 295 76.6
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.1e-124 450.3 296 74.3
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.1e-124 450.3 298 75.8
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.1e-122 443.7 290 76.2
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.4e-122 442.6 290 74.5
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 5.3e-122 441.4 291 74.6
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 7.0e-122 441.0 290 74.8
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.3e-120 436.8 289 73.7
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.3e-120 436.8 289 73.7
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 2.9e-120 435.6 295 72.5
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.8e-120 435.3 295 72.9
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 5.0e-120 434.9 296 73.3
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 6.5e-120 434.5 290 74.8
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 1.4e-119 433.3 289 73.0
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 4.2e-119 431.8 291 73.9
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 4.2e-119 431.8 298 69.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.2e-118 430.3 289 73.0
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.2e-118 430.3 285 74.0
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 1.6e-118 429.9 289 72.7
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 2.1e-118 429.5 293 72.7
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 2.7e-118 429.1 278 76.6
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 8.0e-118 427.6 283 75.3
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 8.0e-118 427.6 288 73.3
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 5.2e-117 424.9 290 72.4
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 5.2e-117 424.9 289 72.0
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 5.2e-117 424.9 289 72.3
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.7e-117 424.5 290 74.1
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 6.7e-117 424.5 289 72.0
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 8.8e-117 424.1 282 73.4
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.1e-116 423.7 291 70.4
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.1e-116 423.7 289 71.3
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 3.3e-116 422.2 297 73.1
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 4.4e-116 421.8 284 73.9
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 4.4e-116 421.8 297 72.7
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 5.7e-116 421.4 287 72.8
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 5.7e-116 421.4 289 71.3
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 1.7e-115 419.9 287 72.5
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 3.7e-115 418.7 291 72.2
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 4.8e-115 418.3 290 72.1
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 4.8e-115 418.3 283 72.4
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 6.3e-115 417.9 291 71.1
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 8.2e-115 417.5 283 73.5
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 8.2e-115 417.5 290 72.1
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.1e-114 417.2 288 71.5
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.4e-114 416.8 283 72.8
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.8e-114 416.4 288 71.5
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 2.4e-114 416.0 288 71.5
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 3.1e-114 415.6 290 71.4
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 7.0e-114 414.5 291 71.8
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 9.1e-114 414.1 288 71.2
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.2e-113 413.7 290 71.4
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.2e-113 413.7 297 70.4
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.2e-113 413.7 288 70.8
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 1.6e-113 413.3 296 70.3
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.6e-113 413.3 290 71.4
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 2.0e-113 412.9 290 70.0
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.6e-113 412.5 288 71.2
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.6e-113 412.5 290 72.1
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 3.5e-113 412.1 292 71.2
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 4.5e-113 411.8 292 71.2
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 7.7e-113 411.0 292 71.2
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.0e-112 410.6 292 72.3
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.0e-112 410.6 292 70.5
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.3e-112 410.2 294 69.0
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.7e-112 409.8 287 71.1
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.2e-112 409.5 289 70.9
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 2.2e-112 409.5 297 69.4
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 5.0e-112 408.3 289 70.9
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 5.0e-112 408.3 289 70.9
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 5.0e-112 408.3 292 69.9
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 5.0e-112 408.3 292 69.9
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 5.0e-112 408.3 292 70.2
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 6.5e-112 407.9 289 70.2
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 6.5e-112 407.9 289 70.6
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 6.5e-112 407.9 289 70.2
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 6.5e-112 407.9 289 70.6
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.1e-111 407.1 289 70.2
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.1e-111 407.1 283 70.7
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 1.5e-111 406.8 283 69.3
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 1.9e-111 406.4 289 70.2
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 3.2e-111 405.6 290 70.3
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 3.2e-111 405.6 289 69.9
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.2e-111 405.2 289 71.3
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 7.2e-111 404.4 289 69.9
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 7.2e-111 404.4 289 69.9
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 7.2e-111 404.4 289 69.9
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 7.2e-111 404.4 292 70.2
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 1.6e-110 403.3 289 69.6
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.1e-110 402.9 294 70.4
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 2.1e-110 402.9 294 68.7
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 2.1e-110 402.9 289 70.6
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 2.7e-110 402.5 289 69.6
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.7e-110 402.5 295 69.8
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 2.7e-110 402.5 294 69.4
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 3.6e-110 402.1 292 69.5
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 3.6e-110 402.1 296 69.9
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 4.7e-110 401.7 296 69.9
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 2.3e-109 399.4 284 71.1
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 3.0e-109 399.1 289 69.6
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 5.2e-109 398.3 279 72.4
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.7e-109 397.9 290 71.4
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.5e-108 396.7 293 68.6
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.5e-108 396.7 298 68.5
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.5e-108 396.7 293 68.6
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 2.0e-108 396.4 283 70.3
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 3.3e-108 395.6 283 70.3
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 9.7e-108 394.0 297 68.4
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 4.8e-107 391.7 283 69.6
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 5.9e-105 384.8 284 69.0
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 3.8e-104 382.1 291 65.3
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 5.0e-104 381.7 291 67.0
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.1e-103 380.6 294 67.3
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 1.8e-101 373.2 308 63.3
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.2e-100 370.5 296 66.2
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 2.0e-100 369.8 286 64.7
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 4.8e-99 365.2 245 75.9
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 7.0e-98 361.3 296 65.2
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 2.7e-97 359.4 306 61.4
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 2.7e-97 359.4 294 65.0
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 5.9e-97 358.2 306 61.1
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 2.3e-96 356.3 310 59.4
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 1.5e-95 353.6 294 63.9
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 4.0e-93 345.5 294 62.2
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 1.4e-90 337.0 261 64.8
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 1.1e-87 327.4 292 58.6
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.0e-85 320.9 294 58.8
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 2.8e-78 296.2 279 54.8
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 2.0e-76 290.0 192 75.0
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 7.5e-76 288.1 214 70.1
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 6.0e-73 278.5 278 52.2
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 3.0e-72 276.2 269 53.9
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 5.8e-68 261.9 142 90.1
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 1.9e-66 256.9 276 52.5
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 3.8e-59 232.6 164 72.0
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 1.4e-58 230.7 265 50.9
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.2e-57 227.6 282 46.8
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 1.0e-56 224.6 143 75.5
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 8.4e-51 204.9 131 73.3
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 3.8e-43 179.5 152 60.5
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 3.1e-29 133.3 99 63.6
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 2.6e-28 130.2 332 28.9
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-23 114.8 110 57.3
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 9.7e-23 111.7 87 67.8
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-21 108.2 110 55.5
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 1.4e-18 97.8 99 56.6
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 9.7e-15 85.1 71 54.9
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 2.5e-10 70.5 85 50.6
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 1.2e-09 68.2 72 52.8
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 1.3e-06 58.2 67 50.7


User provided reference genes

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