Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 2510.7 1255 100.0
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 2498.4 1255 99.5
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 2369.0 1253 94.7
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 2321.6 1253 92.1
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1994.2 1259 78.8
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1993.8 1259 78.9
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1962.6 1254 77.4
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1961.4 1259 77.2
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1961.4 1256 77.6
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1952.9 1046 93.4
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1933.7 1260 76.0
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1919.4 1258 75.0
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1918.3 1260 75.6
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1917.1 1262 75.5
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1916.0 1263 75.1
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1911.0 1261 75.3
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1909.0 1260 75.0
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1906.7 1261 75.3
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1904.8 1256 75.2
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1900.6 1267 74.4
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1900.6 1256 75.6
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1898.6 1260 74.5
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1882.8 1262 74.3
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1881.3 1304 72.7
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1880.1 1261 73.4
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1878.2 1264 73.9
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1876.7 1261 73.4
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1870.5 1260 73.7
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1869.7 1262 73.6
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1866.3 1256 72.9
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1863.2 1254 73.4
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1862.0 1263 73.6
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1861.7 1319 71.1
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1861.7 1284 72.7
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1860.5 1258 73.4
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1860.1 1253 73.3
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1859.0 1258 73.8
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1859.0 1258 73.1
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1857.8 1258 73.0
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1857.4 1286 71.9
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1857.0 1258 73.0
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1856.6 1258 73.0
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1855.9 1274 72.5
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1853.6 1260 73.3
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1853.2 1263 73.3
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1852.8 1263 72.3
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1851.6 1253 73.2
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1850.1 1264 73.2
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1849.7 1256 72.3
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1847.4 1258 72.7
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1842.0 1257 73.2
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1840.5 1262 72.7
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1838.2 1256 71.7
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1837.8 1260 72.6
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1837.4 1259 72.8
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1837.4 1259 72.8
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1836.2 1260 72.7
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1835.1 1261 72.6
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1822.8 1258 72.7
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1820.8 1258 71.3
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1817.4 1250 73.0
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1817.0 1260 71.9
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1816.2 1261 71.6
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1816.2 1262 71.6
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1814.7 1261 71.5
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1814.3 1092 85.2
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1813.9 1243 72.4
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1812.0 1238 73.3
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1810.8 1262 71.5
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1807.7 1261 71.1
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1807.0 1258 71.6
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1803.1 1254 72.1
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1800.8 1267 70.8
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1800.8 1326 68.8
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1798.5 1260 71.0
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1797.3 1260 70.8
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1796.6 1519 62.7
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1796.2 1274 70.8
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1792.7 1261 70.7
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1791.9 1259 71.1
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1791.5 1269 71.9
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1790.8 1261 71.1
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1788.9 1261 70.7
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1786.9 1264 71.0
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1779.6 1285 70.0
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1773.1 1271 70.2
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1766.1 1252 71.7
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1764.2 1252 70.7
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1762.3 1258 71.0
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1762.3 1254 70.7
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1741.5 1250 70.2
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1702.2 1170 72.6
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1686.4 1255 66.5
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1669.1 1090 75.9
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1657.1 1163 70.8
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1590.5 1256 63.3
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1585.5 1224 65.1
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1550.0 1081 71.0
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1530.0 1035 74.2
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1498.8 1007 74.6
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1449.9 1032 70.4
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1445.3 1063 68.3
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1344.7 925 74.3
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1342.4 1017 66.5
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1328.2 856 76.9
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1280.8 1391 49.4
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1250.3 1256 55.4
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1204.1 1357 48.3
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1095.5 742 72.4
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 2.5e-309 1065.8 775 68.6
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 3.5e-303 1045.4 864 62.4
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 7.2e-285 984.6 1164 46.9
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.2e-274 950.7 1011 52.9
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 6.6e-254 881.7 592 76.5
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.9e-241 839.0 536 77.1
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 5.6e-237 825.5 848 54.1
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.7e-201 707.6 443 78.6
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 4.3e-197 693.0 1436 33.1
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 3.7e-188 663.3 454 73.3
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.6e-157 560.8 489 59.1
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.2e-151 542.0 301 85.0
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 8.1e-119 433.0 316 66.8
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.0e-100 372.9 205 85.9
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.6e-93 348.2 372 49.5
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 9.7e-88 329.7 194 78.4
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.2e-87 326.6 317 59.6
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 8.5e-84 316.6 256 60.9
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 8.8e-81 306.6 172 84.3
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 2.1e-74 285.4 159 87.4
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 7.4e-72 276.9 168 86.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.2e-71 275.4 215 65.1
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 1.1e-70 273.1 152 84.2
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.8e-70 272.3 227 62.1
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.2e-67 261.5 265 51.7
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 2.0e-64 252.3 185 63.8
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 9.7e-64 250.0 275 52.0
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 9.7e-64 250.0 275 52.0
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 9.7e-64 250.0 275 52.0
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 1.0e-60 240.0 195 61.5
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.0e-57 228.4 454 33.3
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 3.4e-56 224.9 153 68.0
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.7e-53 213.8 170 63.5
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.0e-49 201.8 132 72.0
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.5e-45 188.3 158 63.3
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.3e-44 186.4 136 60.3
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.3e-43 180.6 107 74.8
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 6.1e-42 177.6 107 74.8
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.5e-40 172.9 120 73.3
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.6e-40 172.2 107 72.9
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.6e-40 172.2 107 72.9
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.9e-39 168.7 106 72.6
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 4.9e-39 167.9 145 60.0
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 4.1e-38 164.9 111 69.4
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.1e-38 164.9 98 76.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.3e-36 159.8 98 82.7
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 1.5e-35 156.4 102 74.5
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 6.8e-33 147.5 95 73.7
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.0e-28 132.1 78 74.4
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 8.1e-26 124.0 109 61.5
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.8e-25 122.9 124 54.0
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 8.9e-25 120.6 65 78.5
Sopen07g031630 Solanum pennellii HOM05D004029 ORTHO05D004613 9.8e-24 117.1 71 83.1
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 1.3e-23 116.7 107 50.5
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 2.2e-23 115.9 705 23.0
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 7.1e-22 110.9 87 64.4
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 5.6e-19 101.3 62 77.4
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 4.4e-16 91.7 81 58.0
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 1.7e-15 89.7 73 60.3
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.9e-15 89.0 52 73.1
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 7.1e-14 84.3 57 66.7
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 1.2e-13 83.6 45 86.7
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 7.8e-13 80.9 99 46.5
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 4.0e-09 68.6 68 48.5
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 3.4e-08 65.5 378 21.4
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 3.4e-08 65.5 52 63.5


User provided reference genes

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