Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 2.0e-71 272.3 136 100.0
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 7.1e-69 263.8 139 96.4
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 4.3e-66 254.6 138 93.5
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 2.8e-65 251.9 139 91.4
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 1.1e-53 213.4 142 81.7
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 3.5e-52 208.4 141 78.7
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 1.9e-50 202.6 137 81.0
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 3.4e-39 165.2 138 68.8
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 6.7e-35 151.0 132 59.8
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 1.3e-33 146.7 127 59.1
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 2.8e-33 145.6 121 62.8
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 4.8e-33 144.8 122 61.5
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 8.2e-33 144.1 121 62.8
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.4e-32 143.3 135 58.5
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 3.1e-32 142.1 126 59.5
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 4.0e-32 141.7 126 60.3
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.0e-32 141.7 117 61.5
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 5.3e-32 141.4 127 60.6
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.9e-32 141.0 117 61.5
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 9.0e-32 140.6 128 57.8
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.0e-32 140.6 117 61.5
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.0e-32 140.6 117 61.5
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.0e-32 140.6 117 61.5
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 9.0e-32 140.6 134 55.2
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 9.0e-32 140.6 131 58.0
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 1.2e-31 140.2 137 55.5
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.5e-31 139.8 117 60.7
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.0e-31 139.4 117 61.5
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 2.0e-31 139.4 119 59.7
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 2.0e-31 139.4 125 59.2
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.6e-31 139.0 117 60.7
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 3.4e-31 138.7 128 57.0
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 5.8e-31 137.9 123 58.5
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 7.6e-31 137.5 121 59.5
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.6e-31 137.5 117 60.7
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.6e-31 137.5 123 57.7
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 1.0e-30 137.1 122 62.3
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.0e-30 137.1 136 54.4
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 1.7e-30 136.3 133 56.4
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 2.2e-30 136.0 127 56.7
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 2.2e-30 136.0 121 59.5
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 2.9e-30 135.6 128 56.2
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 3.8e-30 135.2 129 57.4
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 3.8e-30 135.2 133 53.4
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 3.8e-30 135.2 137 53.3
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 4.9e-30 134.8 124 58.1
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 6.5e-30 134.4 110 63.6
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 6.5e-30 134.4 121 60.3
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 8.4e-30 134.0 110 61.8
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-29 133.7 124 58.1
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.9e-29 132.9 136 52.9
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 2.5e-29 132.5 116 62.1
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 7.1e-29 131.0 120 57.5
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 9.3e-29 130.6 110 61.8
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.2e-28 130.2 117 59.0
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 1.6e-28 129.8 138 54.3
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.1e-28 129.4 117 59.0
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.7e-28 129.0 121 55.4
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.5e-28 128.6 117 59.0
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 4.6e-28 128.3 121 57.0
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 7.9e-28 127.5 117 58.1
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 1.0e-27 127.1 137 54.7
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 1.3e-27 126.7 138 52.2
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 1.3e-27 126.7 138 52.2
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.3e-27 126.7 122 57.4
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.8e-27 126.3 132 51.5
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.1e-27 124.8 106 62.3
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 8.7e-27 124.0 113 59.3
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 1.9e-26 122.9 134 51.5
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.9e-26 122.9 124 55.6
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 5.7e-26 121.3 117 55.6
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 7.4e-26 120.9 130 53.1
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.6e-25 119.8 121 55.4
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 3.7e-25 118.6 131 52.7
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 4.8e-25 118.2 128 50.0
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 6.3e-25 117.9 151 47.0
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 6.3e-25 117.9 123 54.5
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 1.1e-24 117.1 163 42.9
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 1.4e-24 116.7 117 56.4
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 6.9e-24 114.4 126 48.4
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 1.2e-23 113.6 115 54.8
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 1.5e-23 113.2 137 51.8
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 2.0e-23 112.8 117 52.1
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 4.5e-23 111.7 128 48.4
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 7.6e-23 110.9 118 52.5
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 7.6e-23 110.9 117 54.7
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 5.0e-22 108.2 117 50.4
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 6.5e-22 107.8 126 50.0
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 6.5e-22 107.8 130 47.7
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 4.2e-21 105.1 115 52.2
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 4.2e-21 105.1 95 57.9
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 4.2e-21 105.1 117 48.7
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 5.5e-21 104.8 130 46.9
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 9.4e-21 104.0 114 48.2
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 9.4e-21 104.0 126 50.0
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 3.6e-20 102.1 115 52.2
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 4.6e-20 101.7 111 49.5
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 6.1e-20 101.3 124 46.8
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.0e-19 100.5 132 43.2
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.4e-19 100.1 94 55.3
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 3.9e-19 98.6 131 44.3
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 3.9e-19 98.6 130 45.4
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 8.8e-19 97.4 99 51.5
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-18 96.3 85 58.8
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 4.3e-18 95.1 106 48.1
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 9.7e-18 94.0 116 46.6
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.3e-17 93.6 112 44.6
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 2.2e-17 92.8 106 49.1
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 1.4e-16 90.1 123 46.3
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.4e-16 89.4 94 50.0
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 3.1e-16 89.0 74 58.1
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.3e-16 88.2 85 56.5
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 6.9e-16 87.8 127 44.1
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 6.9e-16 87.8 72 63.9
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 9.1e-16 87.4 127 40.9
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 1.2e-15 87.0 73 54.8
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 2.6e-15 85.9 130 43.1
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 3.4e-15 85.5 130 43.1
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 7.7e-15 84.3 92 50.0
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 2.9e-14 82.4 109 43.1
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.9e-14 82.4 67 64.2
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 2.9e-14 82.4 75 57.3
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 1.1e-13 80.5 87 52.9
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 1.4e-13 80.1 72 54.2
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 1.0e-11 73.9 112 43.8
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 2.2e-09 66.2 56 60.7
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 2.8e-09 65.9 73 50.7
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 2.4e-08 62.8 101 40.6
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 7.0e-08 61.2 52 53.8
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 9.1e-08 60.8 83 44.6
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.5e-07 60.1 57 52.6
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.0e-07 59.7 57 52.6
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 3.4e-07 58.9 56 57.1
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 4.5e-07 58.5 83 43.4
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 2.9e-06 55.8 51 54.9


User provided reference genes

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