Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g063060.2 Solanum lycopersicum HOM05D002958 ORTHO05D051257 2.1e-67 258.8 128 100.0
Sopen07g031250 Solanum pennellii HOM05D002958 ORTHO05D051257 1.6e-17 93.2 52 90.4
CAN.G162.50 Capsicum annuum HOM05D002958 ORTHO05D003558 9.4e-15 84.0 51 84.3
Solyc07g063040.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 9.4e-15 84.0 51 84.3
Sopen07g031230 Solanum pennellii HOM05D002958 ORTHO05D003558 9.4e-15 84.0 51 84.3
PGSC0003DMG400012412 Solanum tuberosum HOM05D002958 ORTHO05D003558 9.4e-15 84.0 51 84.3
Nitab4.5_0001336g0100 Nicotiana tabacum HOM05D002958 ORTHO05D003558 1.2e-12 77.0 51 80.4
Peaxi162Scf00069g01630 Petunia axillaris HOM05D002958 ORTHO05D003558 1.5e-12 76.6 51 76.5
Nitab4.5_0000207g0070 Nicotiana tabacum HOM05D002958 ORTHO05D003558 2.6e-12 75.9 51 78.4
Peaxi162Scf00027g00211 Petunia axillaris HOM05D002958 ORTHO05D003558 2.6e-12 75.9 51 78.4
Nitab4.5_0001241g0080 Nicotiana tabacum HOM05D002958 ORTHO05D003558 5.7e-12 74.7 51 76.5
Nitab4.5_0002383g0020 Nicotiana tabacum HOM05D002958 ORTHO05D003558 5.7e-12 74.7 51 78.4
Solyc10g007050.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 1.3e-11 73.6 51 76.5
Sopen10g002950 Solanum pennellii HOM05D002958 ORTHO05D003558 1.3e-11 73.6 51 76.5
CSS0039562 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 1.7e-11 73.2 52 75.0
CSS0047160 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 1.7e-11 73.2 52 75.0
CAN.G1119.24 Capsicum annuum HOM05D002958 ORTHO05D003558 2.2e-11 72.8 51 76.5
MD03G1229100 Malus domestica HOM05D002958 ORTHO05D003558 2.8e-11 72.4 52 71.2
MD11G1249900 Malus domestica HOM05D002958 ORTHO05D003558 3.7e-11 72.0 52 69.2
PGSC0003DMG400025041 Solanum tuberosum HOM05D002958 ORTHO05D003558 4.8e-11 71.6 51 74.5
Glyma.13G276000 Glycine max HOM05D002958 ORTHO05D003558 6.3e-11 71.2 51 72.5
Sc16g0007030 Simmondsia chinensis HOM05D002958 ORTHO05D003558 6.3e-11 71.2 51 74.5
ClCG05G009310 Citrullus lanatus HOM05D002958 ORTHO05D003558 8.3e-11 70.9 51 72.5
Cc05_g11940 Coffea canephora HOM05D002958 ORTHO05D003558 1.1e-10 70.5 51 70.6
FAN11G0087 Fragaria x ananassa HOM05D002958 ORTHO05D003558 1.4e-10 70.1 51 70.6
Lj3g0001420 Lotus japonicus HOM05D002958 ORTHO05D003558 1.8e-10 69.7 51 74.5
CiPaw.12G119100 Carya illinoinensis HOM05D002958 ORTHO05D003558 2.4e-10 69.3 51 68.6
FvH4_3g19790 Fragaria vesca HOM05D002958 ORTHO05D003558 2.4e-10 69.3 51 70.6
Glyma.12G225300 Glycine max HOM05D002958 ORTHO05D003558 2.4e-10 69.3 51 70.6
HanXRQChr09g0270181 Helianthus annuus HOM05D002958 ORTHO05D003558 2.4e-10 69.3 51 64.7
Psat5g242200 Pisum sativum HOM05D002958 ORTHO05D003558 3.1e-10 68.9 51 68.6
GSVIVG01014315001 Vitis vinifera HOM05D002958 ORTHO05D003558 3.1e-10 68.9 51 70.6
CSS0016776 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 4.1e-10 68.6 51 66.7
CSS0042025 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 4.1e-10 68.6 51 66.7
PGR083G2586 Punica granatum HOM05D002958 ORTHO05D003558 4.1e-10 68.6 51 68.6
arahy.Tifrunner.gnm1.ann1.CK6KU2 Arachis hypogaea HOM05D002958 ORTHO05D003558 5.4e-10 68.2 51 70.6
arahy.Tifrunner.gnm1.ann1.VQ4NRX Arachis hypogaea HOM05D002958 ORTHO05D003558 5.4e-10 68.2 51 70.6
Cfa020573 Carpinus fangiana HOM05D002958 ORTHO05D003558 5.4e-10 68.2 51 70.6
Lsat_1_v5_gn_7_104120 Lactuca sativa HOM05D002958 ORTHO05D003558 5.4e-10 68.2 51 66.7
Medtr2g079110 Medicago truncatula HOM05D002958 ORTHO05D003558 5.4e-10 68.2 51 68.6
Phvul.005G072900 Phaseolus vulgaris HOM05D002958 ORTHO05D003558 5.4e-10 68.2 51 68.6
MELO3C019407.2 Cucumis melo HOM05D002958 ORTHO05D003558 7.0e-10 67.8 51 68.6
FAN16G0300 Fragaria x ananassa HOM05D002958 ORTHO05D003558 7.0e-10 67.8 51 68.6
HanXRQChr12g0364161 Helianthus annuus HOM05D002958 ORTHO05D003558 7.0e-10 67.8 51 64.7
RcHm_v2.0_Chr5g0033201 Rosa chinensis HOM05D002958 ORTHO05D003558 7.0e-10 67.8 51 68.6
Sed0005351 Sechium edule HOM05D002958 ORTHO05D003558 7.0e-10 67.8 53 66.0
Ca_03507_v3 Cicer arietinum L. HOM05D002958 ORTHO05D003558 9.1e-10 67.4 51 68.6
Lalb_Chr01g0016791 Lupinus albus HOM05D002958 ORTHO05D003558 9.1e-10 67.4 51 62.7
Nn8g39708 Nelumbo nucifera HOM05D002958 ORTHO05D003558 9.1e-10 67.4 51 68.6
Rhsim04G0021800 Rhododendron simsii HOM05D002958 ORTHO05D003558 9.1e-10 67.4 51 66.7
Zm00001eb169620 Zea mays HOM05D002958 ORTHO05D003558 9.1e-10 67.4 51 64.7
CsaV3_3G019470 Cucumis sativus L. HOM05D002958 ORTHO05D003558 1.2e-09 67.0 51 68.6
FAN21G2785 Fragaria x ananassa HOM05D002958 ORTHO05D003558 1.2e-09 67.0 51 66.7
Glyma.06G240100 Glycine max HOM05D002958 ORTHO05D003558 1.2e-09 67.0 51 70.6
Lj3g0007256 Lotus japonicus HOM05D002958 ORTHO05D003558 1.2e-09 67.0 51 68.6
TPR.G7973 Trifolium pratense HOM05D002958 ORTHO05D003558 1.2e-09 67.0 51 66.7
Oeu024907.2 Olea europaea HOM05D002958 ORTHO05D003558 1.6e-09 66.6 51 70.6
TAR627G0954 Trochodendron aralioides HOM05D002958 ORTHO05D003558 1.6e-09 66.6 51 68.6
Atru.chr2.2483 Acer truncatum HOM05D002958 ORTHO05D003558 2.0e-09 66.2 51 68.6
ECA236G4656 Erigeron canadensis HOM05D002958 ORTHO05D003558 2.0e-09 66.2 51 64.7
Gorai.013G169100 Gossypium raimondii HOM05D002958 ORTHO05D003558 2.0e-09 66.2 51 68.6
Sabra11G0103200 Salix brachista HOM05D002958 ORTHO05D003558 2.0e-09 66.2 51 68.6
VMungo1080G0087 Vigna mungo HOM05D002958 ORTHO05D003558 2.0e-09 66.2 51 66.7
QL08p022191 Quercus lobata HOM05D002958 ORTHO05D003558 2.7e-09 65.9 51 66.7
Sed0013988 Sechium edule HOM05D002958 ORTHO05D003558 2.7e-09 65.9 51 68.6
TWI39G0621 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 2.7e-09 65.9 51 70.6
DCAR_020992 Daucus carota HOM05D002958 ORTHO05D003558 3.5e-09 65.5 51 62.7
Eucgr.F01149 Eucalyptus grandis HOM05D002958 ORTHO05D003558 3.5e-09 65.5 51 66.7
Hma1.2p1_0458F.1_g157030 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 3.5e-09 65.5 51 66.7
Hma1.2p1_2752F.1_g327890 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 3.5e-09 65.5 51 66.7
MBI07_g30198_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 3.5e-09 65.5 51 68.6
vmacro09527 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 3.5e-09 65.5 51 62.7
CANSAT56G4387 Cannabis sativa HOM05D002958 ORTHO05D003558 4.5e-09 65.1 51 68.6
CiPaw.11G170500 Carya illinoinensis HOM05D002958 ORTHO05D003558 4.5e-09 65.1 51 64.7
Dinv14925 Davidia involucrata HOM05D002958 ORTHO05D003558 4.5e-09 65.1 51 66.7
Potri.001G399000 Populus trichocarpa HOM05D002958 ORTHO05D003558 4.5e-09 65.1 51 66.7
EL10Ac4g08198 Beta vulgaris HOM05D002958 ORTHO05D003558 5.9e-09 64.7 51 64.7
Haze_09438 Corylus avellana HOM05D002958 ORTHO05D003558 5.9e-09 64.7 50 68.0
Thhalv10013244m.g Eutrema salsugineum HOM05D002958 ORTHO05D003558 5.9e-09 64.7 51 64.7
Gohir.D13G151100 Gossypium hirsutum HOM05D002958 ORTHO05D003558 5.9e-09 64.7 51 66.7
Gorai.013G170700 Gossypium raimondii HOM05D002958 ORTHO05D003558 5.9e-09 64.7 51 66.7
Lsat_1_v5_gn_9_97501 Lactuca sativa HOM05D002958 ORTHO05D003558 5.9e-09 64.7 51 66.7
Oeu051071.1 Olea europaea HOM05D002958 ORTHO05D003558 5.9e-09 64.7 51 68.6
THA.LOC104799927 Tarenaya hassleriana HOM05D002958 ORTHO05D003558 5.9e-09 64.7 52 63.5
A02p10810 Brassica napus HOM05D002958 ORTHO05D003558 7.7e-09 64.3 51 62.7
BraA02t06142Z Brassica rapa HOM05D002958 ORTHO05D003558 7.7e-09 64.3 51 62.7
Ciclev10007808m.g Citrus clementina HOM05D002958 ORTHO05D003558 7.7e-09 64.3 51 66.7
CsaV3_4G033640 Cucumis sativus L. HOM05D002958 ORTHO05D003558 7.7e-09 64.3 51 66.7
Lj8C155G9 Lonicera japonica HOM05D002958 ORTHO05D003558 7.7e-09 64.3 51 62.7
BcaC03g14381 Brassica carinata HOM05D002958 ORTHO05D003558 1.0e-08 63.9 51 62.7
C02p17920 Brassica napus HOM05D002958 ORTHO05D003558 1.0e-08 63.9 51 62.7
BolC2t07923H Brassica oleracea HOM05D002958 ORTHO05D003558 1.0e-08 63.9 51 62.7
Manes.15G087800 Manihot esculenta HOM05D002958 ORTHO05D003558 1.0e-08 63.9 51 66.7
Sabra16G0261600 Salix brachista HOM05D002958 ORTHO05D003558 1.0e-08 63.9 51 62.7
AUR62019437 Chenopodium quinoa HOM05D002958 ORTHO05D003558 1.3e-08 63.5 51 66.7
MELO3C016693.2 Cucumis melo HOM05D002958 ORTHO05D003558 1.3e-08 63.5 51 64.7
Duzib170G0760 Durio zibethinus HOM05D002958 ORTHO05D003558 1.3e-08 63.5 51 66.7
Manes.03G109300 Manihot esculenta HOM05D002958 ORTHO05D003558 1.3e-08 63.5 51 66.7
Prupe.4G180000 Prunus persica HOM05D002958 ORTHO05D003558 1.3e-08 63.5 51 64.7
Hund02228 Selenicereus undatus HOM05D002958 ORTHO05D003558 1.3e-08 63.5 51 62.7
Thecc.02G181900 Theobroma cacao HOM05D002958 ORTHO05D003558 1.3e-08 63.5 51 62.7
vmacro11871 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 1.3e-08 63.5 51 62.7
BcaC04g20412 Brassica carinata HOM05D002958 ORTHO05D003558 1.7e-08 63.2 51 62.7
A10p11240 Brassica napus HOM05D002958 ORTHO05D003558 1.7e-08 63.2 51 62.7
BolC9t57268H Brassica oleracea HOM05D002958 ORTHO05D003558 1.7e-08 63.2 51 62.7
BraA10t43217Z Brassica rapa HOM05D002958 ORTHO05D003558 1.7e-08 63.2 51 62.7
ClCG11G018020 Citrullus lanatus HOM05D002958 ORTHO05D003558 1.7e-08 63.2 51 64.7
Duzib213G1007 Durio zibethinus HOM05D002958 ORTHO05D003558 1.7e-08 63.2 51 64.7
FAN25G2067 Fragaria x ananassa HOM05D002958 ORTHO05D003558 1.7e-08 63.2 51 68.6
Gohir.A13G146200 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.7e-08 63.2 51 64.7
PSO541G2422 Papaver somniferum HOM05D002958 ORTHO05D003558 1.7e-08 63.2 51 66.7
PSO675G8275 Papaver somniferum HOM05D002958 ORTHO05D003558 1.7e-08 63.2 51 66.7
Actinidia18769 Actinidia chinensis HOM05D002958 ORTHO05D003558 2.2e-08 62.8 51 60.8
Aqoxy1G02381 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 2.2e-08 62.8 51 64.7
BcaB08g35744 Brassica carinata HOM05D002958 ORTHO05D003558 2.2e-08 62.8 51 60.8
Os11g0484000 Oryza sativa ssp. japonica HOM05D002958 ORTHO05D003558 2.2e-08 62.8 51 60.8
Actinidia35245 Actinidia chinensis HOM05D002958 ORTHO05D003558 2.9e-08 62.4 51 58.8
Ah.04g164780 Amaranthus hybridus HOM05D002958 ORTHO05D003558 2.9e-08 62.4 51 62.7
CARHR266980 Cardamine hirsuta HOM05D002958 ORTHO05D003558 2.9e-08 62.4 51 60.8
Cpa.g.sc80.76 Carica papaya HOM05D002958 ORTHO05D003558 2.9e-08 62.4 51 62.7
Lalb_Chr20g0109601 Lupinus albus HOM05D002958 ORTHO05D003558 2.9e-08 62.4 47 66.0
Potri.011G118132 Populus trichocarpa HOM05D002958 ORTHO05D003558 2.9e-08 62.4 51 64.7
AT5G53850 Arabidopsis thaliana HOM05D002958 ORTHO05D003558 3.8e-08 62.0 51 60.8
C09p43840 Brassica napus HOM05D002958 ORTHO05D003558 3.8e-08 62.0 51 62.7
Ciclev10009308m.g Citrus clementina HOM05D002958 ORTHO05D003558 3.8e-08 62.0 51 64.7
COL.COLO4_27183 Corchorus olitorius HOM05D002958 ORTHO05D003558 3.8e-08 62.0 51 62.7
Gohir.A01G063000 Gossypium hirsutum HOM05D002958 ORTHO05D003558 3.8e-08 62.0 51 64.7
Gohir.D01G049400 Gossypium hirsutum HOM05D002958 ORTHO05D003558 3.8e-08 62.0 51 64.7
Gorai.002G069300 Gossypium raimondii HOM05D002958 ORTHO05D003558 3.8e-08 62.0 51 64.7
HPP92_020260 Vanilla planifolia HOM05D002958 ORTHO05D003558 3.8e-08 62.0 51 62.7
AL8G28910 Arabidopsis lyrata HOM05D002958 ORTHO05D003558 5.0e-08 61.6 51 60.8
BcaB05g22079 Brassica carinata HOM05D002958 ORTHO05D003558 5.0e-08 61.6 51 60.8
Carub.0008s1414 Capsella rubella HOM05D002958 ORTHO05D003558 5.0e-08 61.6 51 60.8
ECA240G3077 Erigeron canadensis HOM05D002958 ORTHO05D003558 5.0e-08 61.6 51 60.8
Rhsim06G0199700 Rhododendron simsii HOM05D002958 ORTHO05D003558 5.0e-08 61.6 52 59.6
GSVIVG01020566001 Vitis vinifera HOM05D002958 ORTHO05D003558 6.5e-08 61.2 51 62.7
AUR62039195 Chenopodium quinoa HOM05D002958 ORTHO05D003558 8.5e-08 60.8 51 62.7
Eucgr.F03307 Eucalyptus grandis HOM05D002958 ORTHO05D003558 8.5e-08 60.8 51 60.8
Zm00001eb127150 Zea mays HOM05D002958 ORTHO05D003558 8.5e-08 60.8 51 60.8
Actinidia09690 Actinidia chinensis HOM05D002958 ORTHO05D003558 1.5e-07 60.1 51 62.7
Gohir.A13G147033 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.5e-07 60.1 50 62.0
Sp6g15910 Schrenkiella parvula HOM05D002958 ORTHO05D003558 1.5e-07 60.1 51 58.8
Thecc.07G091600 Theobroma cacao HOM05D002958 ORTHO05D003558 1.5e-07 60.1 51 62.7
ATR0737G076 Amborella trichopoda HOM05D002958 ORTHO05D003558 1.9e-07 59.7 51 62.7
Aa31LG3G10080 Aethionema arabicum HOM05D002958 ORTHO05D003558 2.5e-07 59.3 51 62.7
Dinv13401 Davidia involucrata HOM05D002958 ORTHO05D003558 2.5e-07 59.3 51 60.8
MBI06_g23079_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 3.2e-07 58.9 51 62.7
HanXRQChr11g0328541 Helianthus annuus HOM05D002958 ORTHO05D003558 4.2e-07 58.5 59 50.8
Manes.13G144832 Manihot esculenta HOM05D002958 ORTHO05D003558 4.2e-07 58.5 51 56.9
SalBow7G2893 Salvia bowleyana HOM05D002958 ORTHO05D003558 4.2e-07 58.5 51 62.7
Haze_13197 Corylus avellana HOM05D002958 ORTHO05D003558 7.2e-07 57.8 51 58.8
Cpa.g.sc83.52 Carica papaya HOM05D002958 ORTHO05D003558 9.4e-07 57.4 51 56.9
CDE02G0813 Ceratophyllum demersum HOM05D002958 ORTHO05D003558 9.4e-07 57.4 51 56.9
Actinidia11087 Actinidia chinensis HOM05D002958 ORTHO05D003558 1.6e-06 56.6 51 54.9
Actinidia13022 Actinidia chinensis HOM05D002958 ORTHO05D003558 1.6e-06 56.6 51 54.9
COL.COLO4_36342 Corchorus olitorius HOM05D002958 ORTHO05D003558 2.1e-06 56.2 59 50.8
Migut.M00798 Erythranthe guttata HOM05D002958 ORTHO05D003558 3.6e-06 55.5 51 58.8
MBI06_g20686_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 3.6e-06 55.5 49 61.2
Pp3c4_28740 Physcomitrium patens HOM05D002958 ORTHO05D003558 3.6e-06 55.5 51 56.9
Hma1.2p1_0002F.1_g002040 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 4.7e-06 55.1 51 52.9
Os01g0101200 Oryza sativa ssp. japonica HOM05D002958 ORTHO05D003558 4.7e-06 55.1 53 52.8
QL08p039561 Quercus lobata HOM05D002958 ORTHO05D003558 6.1e-06 54.7 51 56.9
Lj8C110T8 Lonicera japonica HOM05D002958 ORTHO05D003558 8.0e-06 54.3 71 43.7
Pp3c3_4430 Physcomitrium patens HOM05D002958 ORTHO05D003558 8.0e-06 54.3 51 52.9
TWI14G0888 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 8.0e-06 54.3 50 58.0


User provided reference genes

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