Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 6.0e-222 773.9 387 100.0
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 8.4e-216 753.4 390 97.2
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 2.5e-188 662.1 395 86.3
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 8.4e-184 647.1 395 84.3
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 2.6e-164 582.4 392 78.1
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 2.6e-140 502.7 293 86.0
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 9.5e-127 457.6 404 62.1
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 8.0e-126 454.5 399 60.7
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 3.4e-124 449.1 392 59.9
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 2.2e-123 446.4 396 62.1
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 2.9e-123 446.0 396 62.1
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 1.5e-119 433.7 401 56.9
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 1.4e-117 427.2 390 58.7
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 3.1e-117 426.0 394 59.6
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 4.4e-116 422.2 329 66.0
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 2.4e-114 416.4 331 65.0
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 3.5e-113 412.5 390 58.7
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 1.0e-112 411.0 326 63.5
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 5.1e-112 408.7 329 62.9
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 6.6e-112 408.3 386 57.8
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 8.6e-112 407.9 392 57.9
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 1.1e-111 407.5 380 59.5
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 5.6e-111 405.2 294 69.4
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 7.3e-111 404.8 383 58.5
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 2.8e-110 402.9 339 61.7
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 6.2e-110 401.7 390 55.6
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 8.1e-110 401.4 374 56.4
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 2.3e-109 399.8 329 62.3
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 4.0e-109 399.1 380 57.9
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 6.8e-109 398.3 386 55.7
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 7.5e-108 394.8 319 63.9
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 1.3e-107 394.0 326 63.2
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 1.7e-107 393.7 382 57.3
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 6.4e-107 391.7 348 58.9
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 8.3e-107 391.3 399 54.4
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 8.3e-107 391.3 395 55.4
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 8.3e-107 391.3 422 52.6
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 1.1e-106 391.0 388 56.4
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 1.1e-106 391.0 395 53.9
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 1.1e-106 391.0 334 60.2
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 3.2e-106 389.4 315 63.8
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.2e-105 387.5 310 63.2
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 1.2e-105 387.5 379 55.9
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 1.6e-105 387.1 322 59.9
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 2.1e-105 386.7 291 66.7
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 3.5e-105 386.0 375 55.2
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 1.0e-104 384.4 382 55.8
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 1.1e-103 380.9 293 65.9
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 2.5e-103 379.8 396 54.0
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 1.6e-102 377.1 387 53.2
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 2.1e-102 376.7 391 56.5
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 6.2e-102 375.2 386 54.7
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 6.2e-102 375.2 336 59.8
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 1.4e-101 374.0 396 53.5
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 4.0e-101 372.5 362 55.2
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 5.2e-101 372.1 417 52.8
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 4.4e-100 369.0 365 54.2
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 1.7e-99 367.1 335 59.1
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 2.2e-99 366.7 388 51.3
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 4.9e-99 365.5 344 55.8
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 8.4e-99 364.8 312 57.7
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 8.4e-99 364.8 312 57.7
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 1.9e-98 363.6 379 53.8
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 2.4e-98 363.2 389 52.2
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 3.2e-98 362.8 354 54.8
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 4.2e-98 362.5 335 57.0
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 7.1e-98 361.7 301 63.8
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.2e-97 360.9 299 63.9
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 6.0e-97 358.6 408 49.8
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 7.8e-97 358.2 401 51.4
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 1.3e-96 357.5 319 58.6
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 1.7e-96 357.1 382 51.8
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 5.1e-96 355.5 418 48.1
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 1.1e-95 354.4 325 56.3
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 1.9e-95 353.6 311 55.3
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 5.6e-95 352.1 387 49.9
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 9.6e-95 351.3 338 54.1
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 1.1e-93 347.8 374 53.2
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 2.4e-93 346.7 341 54.3
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 3.1e-93 346.3 273 61.2
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 4.0e-93 345.9 321 58.6
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 1.2e-92 344.4 359 52.4
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 7.6e-92 341.7 296 57.8
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 7.6e-92 341.7 335 56.4
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 1.7e-91 340.5 349 53.3
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 4.9e-91 339.0 318 56.9
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 6.4e-91 338.6 370 54.1
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 1.1e-90 337.8 372 51.1
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 1.9e-90 337.0 374 50.8
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 1.9e-90 337.0 382 51.3
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 3.2e-90 336.3 322 54.3
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 1.3e-88 330.9 359 54.0
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 2.1e-86 323.6 237 66.2
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 2.8e-86 323.2 391 47.8
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 4.8e-86 322.4 232 69.4
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 5.3e-77 292.4 353 45.0
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 5.1e-72 275.8 349 43.3
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 3.7e-70 269.6 220 60.9
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 6.2e-70 268.9 253 55.3
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 1.4e-66 257.7 389 37.5
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 5.5e-66 255.8 190 68.9
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 5.0e-59 232.6 242 54.1
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 1.1e-55 221.5 251 49.8
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 1.7e-54 217.6 170 64.7
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 7.2e-50 202.2 179 57.5
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 6.7e-48 195.7 309 38.8
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 6.3e-46 189.1 197 51.3
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 8.2e-46 188.7 361 34.3
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 4.7e-41 172.9 180 53.3
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 8.0e-41 172.2 332 32.5
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 7.4e-39 165.6 248 37.9
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 8.2e-38 162.2 259 37.1
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 9.1e-37 158.7 189 46.6
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 9.1e-37 158.7 269 36.1
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 5.9e-36 156.0 284 35.6
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 1.0e-35 155.2 147 53.7
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 3.8e-35 153.3 307 33.9
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 5.0e-35 152.9 277 36.1
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 1.2e-31 141.7 146 48.6
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 1.5e-31 141.4 291 33.3
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 4.4e-31 139.8 141 51.1
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.2e-30 137.5 136 50.0
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 4.7e-25 119.8 193 38.9
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 7.2e-18 95.9 131 46.6
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 9.5e-18 95.5 192 31.2
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 2.5e-10 70.9 82 53.7
Actinidia09700 Actinidia chinensis HOM05D006259 ORTHO05D053169 1.0e-08 65.5 62 61.3
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 6.4e-06 56.2 59 47.5


User provided reference genes

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