Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g062740.4 Solanum lycopersicum HOM05D010484 ORTHO05D010242 1.7e-225 785.8 422 100.0
Sopen07g030970 Solanum pennellii HOM05D010484 ORTHO05D010242 2.0e-202 709.1 394 97.7
PGSC0003DMG400012438 Solanum tuberosum HOM05D010484 ORTHO05D010242 9.2e-168 594.0 398 83.4
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 1.3e-113 414.1 396 60.6
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 5.0e-113 412.1 396 60.6
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 4.0e-102 375.9 413 56.2
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 6.7e-33 146.0 430 32.6
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 3.8e-28 130.2 411 31.9
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 3.3e-24 117.1 421 28.5
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 1.4e-22 111.7 436 32.1
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 5.3e-22 109.8 129 51.9
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 2.0e-21 107.8 424 30.7
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 7.6e-21 105.9 421 30.2
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 2.2e-20 104.4 415 29.2
MSTRG.15244 Avicennia marina HOM05D010484 ORTHO05D010242 6.5e-20 102.8 380 29.5
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 1.1e-19 102.1 239 38.9
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 1.4e-19 101.7 420 28.1
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 3.2e-19 100.5 415 29.4
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 4.2e-19 100.1 423 29.6
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 1.2e-18 98.6 130 48.5
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 3.9e-17 93.6 408 29.7
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 1.5e-16 91.7 190 41.6
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 9.7e-16 89.0 408 29.4
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 2.8e-15 87.4 407 28.7
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 6.3e-15 86.3 198 36.4
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 8.2e-15 85.9 387 28.7
SGA_v2.0_scaffold130G34346 Striga asiatica HOM05D010484 ORTHO05D001329 1.4e-14 85.1 414 27.5
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 1.4e-14 85.1 417 27.6
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 3.1e-14 84.0 388 27.1
Oeu025352.2 Olea europaea HOM05D001501 ORTHO05D001329 5.3e-14 83.2 189 34.9
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 1.5e-13 81.6 407 26.8
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 5.9e-13 79.7 405 28.9
SalBow8G4768 Salvia bowleyana HOM05D010484 ORTHO05D010242 5.9e-13 79.7 219 36.1
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 1.3e-12 78.6 430 26.5
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 1.7e-12 78.2 404 27.7
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.2e-12 77.8 423 26.2
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 2.9e-12 77.4 157 42.0
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 5.0e-12 76.6 419 29.4
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 4.2e-11 73.6 211 34.1
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 4.2e-11 73.6 418 28.5
SGA_v2.0_scaffold34G13793 Striga asiatica HOM05D010484 ORTHO05D010242 4.2e-11 73.6 226 38.1
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 9.4e-11 72.4 420 25.5
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 9.4e-11 72.4 406 25.6
PGR031G3944 Punica granatum HOM05D001501 ORTHO05D001329 9.4e-11 72.4 417 26.6
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 1.2e-10 72.0 189 36.5
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 1.6e-10 71.6 428 28.0
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 2.7e-10 70.9 400 27.0
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 6.1e-10 69.7 414 26.6
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 6.1e-10 69.7 224 32.6
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 6.1e-10 69.7 178 37.1
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 7.9e-10 69.3 415 23.4
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 7.9e-10 69.3 404 26.0
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 1.8e-09 68.2 419 27.9
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 2.3e-09 67.8 444 25.7
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 3.0e-09 67.4 432 25.0
HanXRQChr10g0302501 Helianthus annuus HOM05D016023 ORTHO05D010242 3.0e-09 67.4 378 26.2
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 3.0e-09 67.4 207 33.3
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 3.0e-09 67.4 408 25.2
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 5.1e-09 66.6 441 25.6
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 5.1e-09 66.6 231 30.3
EL10Ac4g08261 Beta vulgaris HOM05D001501 ORTHO05D001329 8.8e-09 65.9 405 25.9
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.5e-08 64.3 420 24.8
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 4.3e-08 63.5 190 32.1
unitig_747.g21580 Utricularia gibba HOM05D010484 ORTHO05D010242 4.3e-08 63.5 131 36.6
ECA234G3280 Erigeron canadensis HOM05D016023 ORTHO05D010242 9.7e-08 62.4 386 25.6
DCAR_017119 Daucus carota HOM05D010484 ORTHO05D010242 1.3e-07 62.0 229 30.1
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 2.2e-07 61.2 403 24.8
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 2.8e-07 60.8 179 34.6
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 6.3e-07 59.7 201 28.4
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 8.2e-07 59.3 409 25.7
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 8.2e-07 59.3 443 23.3
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 8.2e-07 59.3 402 25.9
Lsat_1_v5_gn_5_127461 Lactuca sativa HOM05D016023 ORTHO05D010242 8.2e-07 59.3 135 35.6
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.1e-06 58.9 394 25.9
AUR62036146 Chenopodium quinoa HOM05D001501 ORTHO05D001329 1.1e-06 58.9 130 39.2
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 1.4e-06 58.5 180 32.2
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 2.4e-06 57.8 192 32.3
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 2.4e-06 57.8 202 29.7
PSO675G3629 Papaver somniferum HOM05D001501 ORTHO05D001329 2.4e-06 57.8 335 26.3
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 3.1e-06 57.4 385 25.2
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 4.1e-06 57.0 424 25.0
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 4.1e-06 57.0 392 27.0
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 4.1e-06 57.0 429 25.9
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 5.3e-06 56.6 416 24.3
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 5.3e-06 56.6 124 37.1
Lsat_1_v5_gn_9_98300 Lactuca sativa HOM05D016023 ORTHO05D010242 5.3e-06 56.6 168 32.1
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 6.9e-06 56.2 386 26.2
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 6.9e-06 56.2 386 26.2
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 9.1e-06 55.8 213 31.0


User provided reference genes

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