Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 0.0e+00 1139.0 570 100.0
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 0.0e+00 1133.6 570 99.5
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 0.0e+00 1128.6 570 98.6
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 2.4e-304 1048.1 570 92.1
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 7.1e-272 940.3 573 79.4
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 2.9e-265 918.3 570 78.8
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 8.4e-265 916.8 568 79.0
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 9.3e-264 913.3 570 77.9
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 1.6e-263 912.5 569 77.3
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 5.1e-262 907.5 571 76.9
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 5.6e-261 904.0 574 76.7
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 2.8e-260 901.7 565 77.3
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 2.8e-260 901.7 565 77.0
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 8.1e-260 900.2 571 76.7
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 1.4e-259 899.4 574 76.1
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 6.9e-259 897.1 573 77.1
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 2.0e-258 895.6 570 76.3
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 2.6e-258 895.2 578 76.5
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 3.4e-258 894.8 578 75.4
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 3.4e-258 894.8 569 75.4
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 4.9e-257 891.0 570 76.0
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 7.1e-256 887.1 571 75.7
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 9.3e-256 886.7 601 73.7
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 1.6e-255 885.9 570 75.4
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 1.6e-255 885.9 571 75.7
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 2.1e-255 885.6 570 75.4
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 6.0e-255 884.0 573 75.0
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 6.0e-255 884.0 570 75.3
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 1.3e-254 882.9 577 74.7
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 3.0e-254 881.7 571 76.0
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 8.7e-254 880.2 550 78.0
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 1.9e-253 879.0 570 74.4
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 2.8e-252 875.2 570 75.1
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 2.4e-251 872.1 567 74.4
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 6.9e-251 870.5 579 74.1
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 6.9e-251 870.5 567 74.8
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 6.9e-251 870.5 572 74.5
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 6.9e-251 870.5 576 74.3
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 9.0e-251 870.2 570 74.6
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 9.0e-251 870.2 572 74.7
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 1.2e-250 869.8 570 73.9
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 3.4e-250 868.2 571 74.3
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 5.8e-250 867.5 572 73.4
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 2.2e-249 865.5 577 74.4
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 3.8e-249 864.8 550 76.2
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 5.0e-249 864.4 570 74.9
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 6.5e-249 864.0 571 73.9
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 1.9e-248 862.4 568 73.4
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 1.2e-247 859.8 514 80.2
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 2.7e-247 858.6 569 74.3
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 2.3e-246 855.5 568 72.9
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 3.9e-246 854.7 568 72.7
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 5.1e-246 854.4 568 72.7
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 6.7e-246 854.0 572 71.9
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 8.7e-246 853.6 568 73.1
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 1.1e-245 853.2 560 73.2
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 1.5e-245 852.8 574 72.8
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 1.5e-245 852.8 566 73.5
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 1.9e-245 852.4 568 72.5
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 2.5e-245 852.0 568 73.2
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 3.3e-245 851.7 568 72.9
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 3.3e-245 851.7 568 72.9
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 1.3e-244 849.7 568 72.2
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 1.6e-244 849.4 568 72.4
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 4.8e-244 847.8 568 72.0
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 6.3e-244 847.4 576 72.6
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 8.2e-244 847.0 574 72.0
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 8.2e-244 847.0 572 72.0
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.1e-243 846.7 569 72.6
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 1.1e-243 846.7 568 72.2
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 1.1e-243 846.7 556 73.9
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 1.4e-243 846.3 567 72.1
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 1.4e-243 846.3 564 72.5
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 5.3e-243 844.3 563 73.7
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 1.2e-242 843.2 573 73.1
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 2.0e-242 842.4 573 72.8
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 2.6e-242 842.0 554 72.7
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 7.7e-242 840.5 594 69.5
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 1.0e-241 840.1 566 72.8
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 2.2e-241 839.0 572 72.7
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 2.2e-241 839.0 531 75.7
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 3.8e-241 838.2 621 68.1
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 1.4e-240 836.3 586 70.5
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 1.9e-240 835.9 572 72.4
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 1.9e-240 835.9 528 75.8
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 2.5e-240 835.5 572 72.0
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 3.6e-239 831.6 514 76.7
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 4.6e-239 831.2 531 75.0
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 7.9e-239 830.5 552 71.9
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 2.8e-236 822.0 577 71.4
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 1.1e-232 810.1 568 70.6
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.4e-232 809.7 565 72.4
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 1.9e-232 809.3 531 75.0
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 4.2e-232 808.1 572 69.2
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 1.2e-231 806.6 568 69.9
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 3.3e-229 798.5 528 72.9
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 4.8e-228 794.7 436 91.3
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 3.8e-225 785.0 509 74.9
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 4.7e-223 778.1 558 69.9
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 2.7e-215 752.3 481 76.1
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 5.4e-211 738.0 616 61.0
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 3.5e-210 735.3 568 66.2
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 6.3e-204 714.5 448 77.0
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 3.7e-196 688.7 439 76.3
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 1.2e-189 667.2 431 76.3
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 2.9e-188 662.5 428 75.0
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.4e-187 660.2 408 76.7
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 2.6e-181 639.4 433 74.6
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 1.4e-174 617.1 541 56.2
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 5.2e-174 615.1 426 72.5
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 1.3e-161 573.9 433 68.1
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 1.2e-149 534.3 558 51.3
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 5.8e-149 531.9 371 73.3
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 2.2e-148 530.0 569 50.4
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 1.5e-144 517.3 553 51.9
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 1.4e-118 431.0 382 59.9
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 5.9e-117 425.6 583 40.5
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.3e-116 424.5 278 81.3
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.1e-110 404.8 584 47.3
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-90 336.3 220 70.0
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 3.0e-89 333.6 212 80.2
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 8.6e-84 315.5 217 74.2
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 2.4e-78 297.4 223 61.9
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 5.2e-73 279.6 576 33.3
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 2.3e-68 264.2 594 32.3
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 5.6e-59 233.0 556 31.8
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 7.1e-54 216.1 126 79.4
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.6e-53 214.9 148 75.7
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 7.8e-53 212.6 151 72.2
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 6.2e-50 203.0 139 75.5
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 7.6e-40 169.5 183 57.9
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 1.3e-39 168.7 95 75.8
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 7.1e-38 162.9 138 66.7
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 4.8e-26 123.6 88 71.6
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 5.1e-20 103.6 77 63.6
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 6.5e-15 86.7 121 40.5
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 8.5e-15 86.3 50 72.0
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 4.2e-14 84.0 49 77.6
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 4.6e-13 80.5 59 74.6


User provided reference genes

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