Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 2.6e-264 914.8 456 100.0
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 1.1e-262 909.4 456 99.3
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.3e-260 902.5 456 98.5
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 6.5e-252 873.6 456 94.5
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 2.7e-250 868.2 456 94.3
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 2.8e-247 858.2 456 93.4
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 8.8e-241 836.6 454 90.5
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 4.6e-213 744.6 461 79.6
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 3.0e-212 741.9 454 79.7
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 8.6e-212 740.3 460 78.3
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 1.8e-209 732.6 457 77.5
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 3.2e-206 721.8 460 78.3
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 5.1e-204 714.5 463 76.5
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 3.3e-203 711.8 463 76.0
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 1.2e-202 709.9 460 76.1
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 3.6e-202 708.4 466 76.4
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 5.8e-200 701.0 461 76.1
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.3e-199 699.9 473 74.4
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 2.2e-199 699.1 460 76.5
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 1.3e-196 689.9 461 74.8
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 1.5e-195 686.4 459 74.5
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.9e-195 686.0 455 74.5
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 1.6e-194 682.9 459 73.6
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 3.6e-194 681.8 458 72.7
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 8.1e-194 680.6 460 73.3
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 8.1e-194 680.6 462 71.6
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 1.8e-193 679.5 463 73.0
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 2.4e-193 679.1 477 71.5
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 3.1e-193 678.7 462 72.1
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 4.0e-193 678.3 459 72.8
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 5.3e-193 677.9 455 73.2
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 2.0e-192 676.0 460 73.0
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 4.5e-192 674.9 460 71.5
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 4.5e-192 674.9 455 74.3
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 6.4e-191 671.0 457 72.6
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 1.1e-190 670.2 462 72.1
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 1.9e-190 669.5 462 72.3
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 3.2e-190 668.7 462 72.5
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 3.2e-190 668.7 455 71.4
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 5.4e-190 667.9 457 72.0
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 7.1e-190 667.5 462 71.9
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 7.1e-190 667.5 463 71.1
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 1.6e-189 666.4 457 71.8
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 2.7e-189 665.6 462 71.6
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 2.7e-189 665.6 448 72.5
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 4.6e-189 664.8 473 70.4
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 7.9e-189 664.1 462 70.8
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 1.3e-188 663.3 462 71.9
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 1.3e-188 663.3 458 72.5
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 2.3e-188 662.5 457 73.5
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 3.0e-188 662.1 463 69.5
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 5.1e-188 661.4 477 69.2
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 5.1e-188 661.4 460 70.4
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 6.7e-188 661.0 455 71.0
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 8.7e-188 660.6 461 71.4
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 1.9e-187 659.4 462 70.1
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 3.3e-187 658.7 455 70.5
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 4.3e-187 658.3 459 72.1
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 7.4e-187 657.5 452 71.9
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 9.6e-187 657.1 452 72.1
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 2.1e-186 656.0 456 71.7
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 2.1e-186 656.0 456 71.7
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 3.7e-186 655.2 459 69.7
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 8.1e-186 654.1 455 70.3
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 1.4e-185 653.3 461 69.8
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 3.1e-185 652.1 461 69.8
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 6.9e-185 651.0 464 69.4
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 9.0e-185 650.6 454 70.9
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 9.0e-185 650.6 464 69.6
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 3.4e-184 648.7 458 68.6
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 9.9e-184 647.1 426 75.1
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 4.9e-183 644.8 459 68.4
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 6.4e-183 644.4 461 70.5
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.9e-182 642.9 455 69.7
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 1.6e-181 639.8 460 69.8
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 1.6e-181 639.8 460 68.7
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 7.9e-181 637.5 463 68.5
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 1.8e-180 636.3 501 64.9
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 6.7e-180 634.4 472 68.6
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 5.6e-179 631.3 445 70.8
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 1.3e-178 630.2 458 67.7
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.4e-177 625.9 457 68.7
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 1.2e-176 623.6 468 67.7
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 2.6e-176 622.5 461 68.3
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 1.6e-173 613.2 513 61.6
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.0e-167 594.0 471 65.8
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 3.8e-167 592.0 457 66.1
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 6.5e-167 591.3 456 64.7
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 8.5e-167 590.9 401 70.8
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 4.3e-163 578.6 410 68.5
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 2.8e-162 575.9 460 63.3
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 2.6e-160 569.3 411 67.4
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 2.2e-159 566.2 427 66.7
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 1.0e-156 557.4 462 62.3
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 2.0e-152 543.1 462 62.6
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 1.5e-147 526.9 474 60.5
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 5.9e-136 488.4 417 62.4
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 3.8e-135 485.7 450 53.6
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 1.2e-133 480.7 311 77.5
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 1.6e-128 463.8 342 67.3
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 5.9e-120 435.3 299 73.2
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 9.8e-115 417.9 281 71.2
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 5.0e-111 405.6 303 66.3
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 2.0e-104 383.6 332 62.3
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.2e-101 374.4 345 59.1
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 2.8e-101 373.2 453 45.7
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 9.2e-97 358.2 410 48.0
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 1.9e-94 350.5 453 48.3
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 2.6e-91 340.1 465 44.1
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 1.7e-90 337.4 378 50.8
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 1.3e-87 327.8 465 39.6
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 1.6e-85 320.9 227 66.1
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 3.6e-85 319.7 455 41.5
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 2.6e-83 313.5 301 56.1
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 1.9e-81 307.4 231 67.1
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 7.6e-75 285.4 243 63.8
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 1.3e-71 274.6 256 52.3
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.5e-62 244.6 119 99.2
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 7.4e-62 242.3 164 69.5
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 7.1e-57 225.7 161 68.3
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 8.2e-45 185.7 158 65.2
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 3.2e-41 173.7 128 69.5
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 1.1e-38 165.2 124 63.7
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 2.0e-38 164.5 123 64.2
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 3.3e-38 163.7 120 68.3
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 1.0e-34 152.1 82 90.2
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 4.2e-25 120.2 102 64.7
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 8.8e-23 112.5 413 26.9
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 9.1e-20 102.4 103 52.4
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 1.8e-15 88.2 52 78.8
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 1.2e-11 75.5 63 60.3
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 7.7e-11 72.8 54 72.2


User provided reference genes

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