Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.9e-171 605.9 347 100.0
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 3.0e-164 582.0 347 96.8
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.6e-152 542.3 346 91.3
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 5.5e-102 375.2 299 65.9
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 6.4e-90 335.1 299 61.2
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 3.6e-85 319.3 298 59.7
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.3e-47 194.5 296 44.9
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 1.3e-45 188.0 296 43.9
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 6.0e-40 169.1 269 43.9
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 2.4e-36 157.1 204 50.0
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 2.0e-35 154.1 297 36.4
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 2.1e-32 144.1 292 36.6
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 1.8e-31 141.0 291 35.7
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 2.3e-31 140.6 240 36.7
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 7.4e-30 135.6 313 38.7
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 9.7e-30 135.2 232 38.8
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 2.2e-29 134.0 218 39.9
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 2.8e-29 133.7 239 39.3
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 8.2e-29 132.1 232 39.2
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 8.2e-29 132.1 254 36.6
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 1.8e-28 131.0 232 36.6
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 5.3e-28 129.4 214 39.7
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 1.2e-27 128.3 234 38.0
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 1.2e-27 128.3 277 32.9
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.5e-27 127.9 263 35.7
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 2.0e-27 127.5 178 39.9
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 2.6e-27 127.1 195 41.0
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 4.5e-27 126.3 214 39.7
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 5.9e-27 125.9 126 46.0
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 7.7e-27 125.6 205 37.6
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 7.7e-27 125.6 201 38.8
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.3e-26 124.8 164 44.5
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 2.2e-26 124.0 217 35.5
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 2.9e-26 123.6 293 32.8
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 3.8e-26 123.2 199 37.2
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 5.0e-26 122.9 222 36.9
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 5.0e-26 122.9 235 33.6
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 6.5e-26 122.5 196 39.3
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 6.5e-26 122.5 90 54.4
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 6.5e-26 122.5 209 37.8
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 6.5e-26 122.5 111 54.1
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 8.5e-26 122.1 179 39.7
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.1e-25 121.7 235 37.9
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.5e-25 120.6 279 32.3
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 3.2e-25 120.2 113 55.8
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 4.2e-25 119.8 191 38.7
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 5.5e-25 119.4 275 32.4
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 7.2e-25 119.0 107 54.2
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 7.2e-25 119.0 285 32.3
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 9.4e-25 118.6 90 53.3
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 9.4e-25 118.6 205 34.6
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 9.4e-25 118.6 232 34.9
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 2.1e-24 117.5 251 37.1
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 2.1e-24 117.5 284 31.7
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 3.6e-24 116.7 263 31.6
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 4.6e-24 116.3 235 32.3
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 6.1e-24 115.9 90 51.1
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 6.1e-24 115.9 210 42.4
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 7.9e-24 115.5 230 37.0
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 1.4e-23 114.8 143 43.4
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.8e-23 114.4 147 41.5
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 3.0e-23 113.6 210 34.8
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 3.0e-23 113.6 288 28.5
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 3.0e-23 113.6 281 28.8
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 5.1e-23 112.8 154 43.5
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 5.1e-23 112.8 183 34.4
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.1e-22 111.7 180 37.2
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 1.1e-22 111.7 291 35.1
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 2.5e-22 110.5 280 30.7
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 3.3e-22 110.2 241 34.4
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 4.3e-22 109.8 86 52.3
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 4.3e-22 109.8 288 34.0
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 4.3e-22 109.8 230 36.1
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 5.7e-22 109.4 220 34.5
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 9.7e-22 108.6 126 47.6
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 3.7e-21 106.7 171 39.8
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 4.8e-21 106.3 165 38.2
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 8.2e-21 105.5 138 39.9
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.4e-20 104.8 245 33.9
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 1.8e-20 104.4 194 35.1
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 2.4e-20 104.0 180 36.7
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 3.1e-20 103.6 215 33.5
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 3.1e-20 103.6 227 33.9
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 3.1e-20 103.6 108 46.3
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 4.1e-20 103.2 202 35.6
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 4.1e-20 103.2 179 35.8
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 5.3e-20 102.8 218 32.6
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 5.3e-20 102.8 177 35.0
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 9.1e-20 102.1 178 38.2
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 9.1e-20 102.1 112 45.5
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 4.5e-19 99.8 308 29.2
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 1.3e-18 98.2 193 33.7
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 3.8e-18 96.7 271 31.4
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 1.1e-17 95.1 201 32.3
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 1.4e-17 94.7 221 35.3
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.9e-17 94.4 199 34.2
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 2.5e-17 94.0 258 29.1
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 4.2e-17 93.2 187 34.8
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 7.2e-17 92.4 87 47.1
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 7.2e-17 92.4 191 35.1
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 7.2e-17 92.4 253 32.4
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 1.2e-16 91.7 191 33.0
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 2.7e-16 90.5 94 44.7
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 3.6e-16 90.1 80 48.8
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 3.6e-16 90.1 122 36.9
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 4.7e-16 89.7 101 44.6
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 6.1e-16 89.4 182 33.0
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 7.9e-16 89.0 181 34.3
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 7.9e-16 89.0 181 34.3
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.4e-15 88.2 293 30.4
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 1.4e-15 88.2 101 44.6
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 3.9e-15 86.7 187 36.4
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 5.1e-15 86.3 69 62.3
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 8.8e-15 85.5 182 37.4
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 1.1e-14 85.1 182 37.4
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 4.4e-14 83.2 117 31.6
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.3e-13 81.6 208 29.3
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 8.2e-13 79.0 175 34.9
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.1e-12 78.6 104 44.2
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 2.0e-11 74.3 132 29.5
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 2.0e-11 74.3 76 48.7
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.2e-10 70.9 123 38.2
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.5e-09 67.4 47 59.6


User provided reference genes

Program Settings