Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 4.3e-276 954.1 516 100.0
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 4.9e-272 940.6 516 99.0
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 2.1e-267 925.2 515 97.5
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 6.9e-258 893.6 518 93.2
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 3.1e-242 841.6 516 88.6
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 5.7e-236 820.8 516 86.8
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 2.8e-211 738.8 515 70.5
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.1e-210 735.3 515 69.3
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.1e-207 726.9 516 68.8
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.4e-205 719.9 515 69.1
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 4.1e-202 708.4 541 65.4
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.3e-200 703.4 518 67.8
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 5.0e-200 701.4 517 67.1
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 2.5e-199 699.1 525 65.0
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.6e-198 695.3 517 65.0
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 6.1e-198 694.5 517 65.0
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 3.0e-197 692.2 521 63.9
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 1.7e-195 686.4 520 65.6
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.2e-195 686.0 515 65.2
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.9e-195 685.6 542 63.8
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 9.2e-194 680.6 519 64.4
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.2e-193 680.2 520 63.8
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 3.9e-192 675.2 516 64.3
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 6.6e-192 674.5 519 64.2
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 2.5e-191 672.5 526 64.1
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 2.5e-191 672.5 516 63.4
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.5e-191 672.5 521 63.1
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 5.6e-191 671.4 519 63.2
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 7.3e-191 671.0 518 64.1
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 9.5e-191 670.6 522 64.4
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 2.1e-190 669.5 520 64.6
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 8.0e-190 667.5 518 63.3
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.1e-189 667.2 518 64.3
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.4e-189 666.8 517 62.5
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 2.3e-189 666.0 520 64.4
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 4.0e-189 665.2 520 64.4
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 8.9e-189 664.1 517 62.5
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.3e-187 660.2 522 63.2
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 3.7e-187 658.7 522 63.2
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 4.9e-187 658.3 520 61.3
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 4.9e-187 658.3 522 63.0
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 6.4e-187 657.9 520 63.3
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 6.4e-187 657.9 515 62.9
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.4e-186 656.8 517 62.3
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.4e-186 656.8 519 63.0
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 4.1e-186 655.2 521 63.7
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.1e-186 655.2 518 62.0
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 4.6e-185 651.7 517 64.2
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 7.8e-185 651.0 519 61.8
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.0e-184 650.6 518 61.6
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.0e-184 648.3 517 61.7
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 7.3e-183 644.4 519 63.2
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.1e-182 642.9 524 62.2
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 6.2e-182 641.3 519 61.3
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 6.2e-182 641.3 520 62.9
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 6.2e-182 641.3 519 61.5
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.1e-181 640.6 515 61.6
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.8e-181 639.8 523 60.6
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 3.1e-181 639.0 523 61.4
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.8e-180 634.8 517 62.5
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 9.9e-180 634.0 523 60.4
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 6.4e-179 631.3 479 64.7
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 8.3e-179 630.9 521 61.2
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 4.1e-178 628.6 568 56.9
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 9.2e-178 627.5 539 58.8
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 2.1e-177 626.3 517 60.0
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 2.1e-177 626.3 527 59.4
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.0e-177 624.8 558 59.3
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.3e-176 623.6 584 54.6
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.3e-176 623.6 526 62.2
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.7e-176 623.2 517 60.5
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 3.0e-176 622.5 524 60.5
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 6.6e-176 621.3 475 63.8
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.5e-175 619.4 522 60.2
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.1e-174 616.3 556 58.5
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.8e-174 615.9 522 60.0
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.7e-174 615.1 539 59.9
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.5e-172 610.1 522 59.2
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 4.4e-172 608.6 523 60.2
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 7.6e-172 607.8 519 59.7
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.3e-171 607.1 523 58.7
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 4.9e-171 605.1 518 57.1
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 9.2e-170 600.9 524 58.8
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.7e-169 599.4 524 58.2
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.9e-168 595.5 517 58.4
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 5.1e-168 595.1 528 58.1
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 3.3e-167 592.4 519 57.6
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 9.6e-167 590.9 520 58.1
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.2e-166 590.5 521 57.8
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 1.2e-166 590.5 428 67.3
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.6e-166 590.1 521 57.8
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.2e-166 588.2 476 60.9
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.1e-165 587.4 519 57.4
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.1e-165 587.4 519 57.4
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.4e-165 586.3 479 61.2
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.0e-165 585.5 517 57.1
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 9.9e-164 580.9 515 57.1
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.1e-162 577.4 519 56.3
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 9.3e-162 574.3 430 66.3
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.6e-161 573.5 515 56.3
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 3.5e-161 572.4 516 56.2
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 4.6e-161 572.0 515 56.1
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 4.6e-161 572.0 515 56.1
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 4.6e-161 572.0 515 56.1
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 6.0e-161 571.6 517 56.7
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.7e-160 570.1 518 56.4
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 5.1e-160 568.5 516 55.8
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 5.1e-160 568.5 515 56.1
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 6.6e-160 568.2 517 55.7
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 4.3e-159 565.5 518 56.2
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.6e-158 563.5 528 55.1
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.8e-158 562.8 428 65.7
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 1.5e-156 557.0 524 55.3
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.4e-154 548.5 287 90.9
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 3.5e-153 545.8 440 63.4
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.3e-151 538.9 432 62.7
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 5.3e-149 531.9 535 50.5
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.5e-148 530.4 391 67.3
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.1e-146 524.2 542 50.9
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 7.9e-145 518.1 478 56.7
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 3.3e-143 512.7 477 56.4
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 3.4e-140 502.7 479 55.1
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.3e-139 500.7 437 59.3
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 4.9e-139 498.8 290 77.6
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.2e-137 494.2 498 51.4
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.1e-135 487.6 395 62.0
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.3e-135 486.1 551 47.0
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 4.1e-133 479.2 520 51.2
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 2.0e-132 476.9 282 76.2
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.0e-132 476.9 380 61.3
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 5.0e-131 472.2 505 49.9
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 8.8e-128 461.5 307 67.8
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 7.4e-119 431.8 290 66.9
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 5.2e-112 409.1 287 66.9
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.6e-108 396.7 292 61.6
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 6.1e-105 385.6 308 59.7
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 2.0e-100 370.5 320 56.6
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.0e-99 368.2 300 57.3
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 5.2e-96 355.9 383 46.0
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.5e-95 354.4 337 53.1
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.9e-91 340.1 338 55.9
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 8.9e-88 328.6 312 51.3
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 5.0e-83 312.8 420 44.3
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.4e-61 241.5 446 42.6
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 3.2e-61 240.4 205 56.1
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 3.6e-49 200.3 230 48.7
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.8e-49 199.9 179 55.3
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.2e-38 164.5 95 77.9
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.9e-37 161.4 92 78.3
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.4e-37 159.8 95 75.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 5.1e-35 153.3 235 41.7
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.7e-35 152.9 198 45.5
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.5e-34 151.0 144 51.4
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.5e-34 151.0 144 51.4
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.8e-32 144.8 144 45.1
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 6.9e-32 142.9 230 41.3
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.9e-30 136.7 166 48.8
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 8.4e-30 136.0 87 70.1
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 8.4e-30 136.0 87 70.1
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.8e-27 128.3 182 42.9
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 1.3e-25 122.1 151 45.7
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 8.4e-22 109.4 227 35.2
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.2e-21 107.5 179 38.5
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 8.2e-17 92.8 193 34.2
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.1e-13 82.4 45 80.0
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.1e-08 65.9 60 53.3


User provided reference genes

Program Settings