Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 1.4e-54 216.1 110 100.0
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.3e-52 209.5 110 95.5
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 6.1e-47 190.7 110 90.0
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 3.9e-25 118.2 115 61.7
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 2.5e-24 115.5 110 59.1
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 9.5e-24 113.6 117 57.3
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 7.6e-21 104.0 113 53.1
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 2.1e-15 85.9 103 52.4
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.6e-13 77.4 102 42.2
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.6e-13 77.4 102 44.1
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 9.9e-13 77.0 102 41.2
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.7e-12 76.3 107 40.2
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 2.9e-12 75.5 105 39.0
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 4.9e-12 74.7 105 38.1
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 6.4e-12 74.3 101 40.6
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 6.4e-12 74.3 101 40.6
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 6.4e-12 74.3 101 40.6
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 8.4e-12 73.9 101 39.6
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 8.4e-12 73.9 101 39.6
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-11 73.6 101 38.6
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.1e-11 73.6 103 41.7
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 1.1e-11 73.6 99 44.4
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 1.4e-11 73.2 102 45.1
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 1.9e-11 72.8 105 42.9
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 1.9e-11 72.8 98 49.0
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 2.4e-11 72.4 104 39.4
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 4.2e-11 71.6 105 39.0
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 4.2e-11 71.6 104 39.4
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 4.2e-11 71.6 104 39.4
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 4.2e-11 71.6 98 43.9
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 4.2e-11 71.6 100 43.0
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 4.2e-11 71.6 97 47.4
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 5.4e-11 71.2 101 38.6
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 7.1e-11 70.9 101 37.6
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 7.1e-11 70.9 106 44.3
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 9.3e-11 70.5 105 38.1
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 1.2e-10 70.1 101 37.6
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.2e-10 70.1 100 42.0
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 1.6e-10 69.7 105 37.1
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.6e-10 69.7 99 44.4
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.1e-10 69.3 101 37.6
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.1e-10 69.3 106 36.8
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 2.7e-10 68.9 101 39.6
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 2.7e-10 68.9 96 43.8
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 3.5e-10 68.6 102 44.1
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 4.6e-10 68.2 95 44.2
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 6.0e-10 67.8 106 36.8
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 6.0e-10 67.8 98 44.9
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 7.8e-10 67.4 98 41.8
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 7.8e-10 67.4 101 39.6
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.8e-10 67.4 99 47.5
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.0e-09 67.0 106 38.7
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.3e-09 66.6 96 40.6
Solyc10g007580.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 1.7e-09 66.2 107 43.0
Sopen10g003500 Solanum pennellii HOM05D004022 ORTHO05D004090 1.7e-09 66.2 107 43.0
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.7e-09 66.2 101 38.6
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 3.0e-09 65.5 103 45.6
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 3.9e-09 65.1 100 43.0
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 3.9e-09 65.1 101 40.6
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 5.1e-09 64.7 128 38.3
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 5.1e-09 64.7 109 43.1
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 5.1e-09 64.7 101 41.6
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 6.6e-09 64.3 109 37.6
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 6.6e-09 64.3 101 39.6
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 6.6e-09 64.3 111 36.9
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 6.6e-09 64.3 108 39.8
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 8.7e-09 63.9 111 37.8
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 8.7e-09 63.9 104 40.4
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 8.7e-09 63.9 95 41.1
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.1e-08 63.5 96 39.6
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.1e-08 63.5 109 41.3
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 1.1e-08 63.5 100 42.0
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.1e-08 63.5 106 40.6
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.1e-08 63.5 122 38.5
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 1.1e-08 63.5 97 45.4
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 1.1e-08 63.5 95 40.0
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.1e-08 63.5 96 43.8
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 1.5e-08 63.2 101 38.6
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.5e-08 63.2 105 43.8
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 1.5e-08 63.2 97 45.4
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 1.9e-08 62.8 103 38.8
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 1.9e-08 62.8 103 38.8
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 1.9e-08 62.8 101 38.6
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.9e-08 62.8 110 36.4
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 1.9e-08 62.8 106 37.7
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 1.9e-08 62.8 111 39.6
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 2.5e-08 62.4 103 37.9
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 2.5e-08 62.4 103 36.9
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 2.5e-08 62.4 103 37.9
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 3.3e-08 62.0 114 36.0
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 3.3e-08 62.0 92 43.5
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 3.3e-08 62.0 102 39.2
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 4.3e-08 61.6 101 37.6
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 4.3e-08 61.6 103 36.9
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 4.3e-08 61.6 104 35.6
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 4.3e-08 61.6 101 38.6
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 5.6e-08 61.2 103 35.9
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 5.6e-08 61.2 116 34.5
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.6e-08 61.2 103 39.8
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 5.6e-08 61.2 115 33.9
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 7.3e-08 60.8 104 37.5
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 7.3e-08 60.8 117 35.9
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 7.3e-08 60.8 125 35.2
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 7.3e-08 60.8 98 40.8
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 9.6e-08 60.5 106 42.5
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 9.6e-08 60.5 117 40.2
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 9.6e-08 60.5 117 40.2
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 9.6e-08 60.5 95 43.2
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.3e-07 60.1 129 37.2
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 1.3e-07 60.1 102 37.3
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.3e-07 60.1 101 42.6
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.6e-07 59.7 100 39.0
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.6e-07 59.7 100 39.0
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.6e-07 59.7 95 40.0
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 1.6e-07 59.7 100 40.0
CAN.G262.11 Capsicum annuum HOM05D004022 ORTHO05D004090 2.1e-07 59.3 103 39.8
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 2.1e-07 59.3 97 41.2
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 3.6e-07 58.5 101 34.7
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 3.6e-07 58.5 99 37.4
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 4.8e-07 58.2 99 37.4
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 4.8e-07 58.2 36 72.2
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 6.2e-07 57.8 103 34.0
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 6.2e-07 57.8 102 45.1
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 6.2e-07 57.8 112 37.5
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 8.1e-07 57.4 32 81.2
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 8.1e-07 57.4 32 81.2
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 8.1e-07 57.4 92 38.0
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 1.1e-06 57.0 100 38.0
DCAR_013798 Daucus carota HOM05D057188 ORTHO05D004090 1.1e-06 57.0 93 41.9
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.1e-06 57.0 118 39.8
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 1.4e-06 56.6 95 38.9
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 1.8e-06 56.2 115 35.7
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.8e-06 56.2 101 33.7
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.4e-06 55.8 62 50.0
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.1e-06 55.5 115 34.8
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 3.1e-06 55.5 99 37.4
Rhsim13G0113700 Rhododendron simsii HOM05D004022 ORTHO05D004090 3.1e-06 55.5 93 41.9
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 4.0e-06 55.1 99 36.4
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 4.0e-06 55.1 99 36.4
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 4.0e-06 55.1 95 37.9
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 4.0e-06 55.1 94 42.6
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 9.0e-06 53.9 70 42.9
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 9.0e-06 53.9 102 38.2
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 9.0e-06 53.9 67 50.7


User provided reference genes

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