Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 2.0e-46 191.0 461 100.0
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 2.0e-46 191.0 461 100.0
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 5.4e-44 183.0 461 98.5
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 1.6e-35 154.8 85 92.9
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 5.4e-28 129.8 458 92.6
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 7.0e-28 129.4 458 92.6
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 3.5e-27 127.1 458 92.1
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 8.6e-26 122.5 61 95.1
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.2e-24 118.6 82 75.6
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 4.7e-24 116.7 78 75.6
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 8.1e-24 115.9 80 66.2
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 1.1e-23 115.5 82 62.2
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 1.8e-23 114.8 82 76.8
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 5.2e-23 113.2 77 76.6
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 6.8e-23 112.8 81 66.7
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 8.9e-23 112.5 80 65.0
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 8.9e-23 112.5 77 68.8
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 1.5e-22 111.7 67 77.6
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 3.4e-22 110.5 82 62.2
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 7.5e-22 109.4 80 62.5
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.7e-21 108.2 67 76.1
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.2e-21 107.8 77 74.0
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 2.2e-21 107.8 82 62.2
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 2.2e-21 107.8 78 64.1
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 2.9e-21 107.5 67 74.6
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 2.9e-21 107.5 67 73.1
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 3.7e-21 107.1 80 62.5
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 8.3e-21 105.9 67 74.6
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 8.3e-21 105.9 80 60.0
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.1e-20 105.5 67 73.1
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.4e-20 105.1 80 57.5
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.4e-20 105.1 67 74.6
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 1.4e-20 105.1 81 59.3
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.9e-20 104.8 67 74.6
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 2.4e-20 104.4 67 71.6
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 3.2e-20 104.0 71 69.0
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 3.2e-20 104.0 80 60.0
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 3.2e-20 104.0 67 73.1
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 4.1e-20 103.6 79 59.5
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 4.1e-20 103.6 80 57.5
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 5.4e-20 103.2 78 59.0
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 7.1e-20 102.8 66 71.2
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 7.1e-20 102.8 77 62.3
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 9.2e-20 102.4 80 60.0
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 1.2e-19 102.1 67 70.1
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 1.2e-19 102.1 67 67.2
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.6e-19 101.7 67 73.1
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.6e-19 101.7 67 73.1
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.6e-19 101.7 83 53.0
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 2.7e-19 100.9 67 71.6
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 3.5e-19 100.5 66 69.7
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 3.5e-19 100.5 67 73.1
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 4.6e-19 100.1 73 72.6
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 4.6e-19 100.1 67 65.7
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 6.0e-19 99.8 65 70.8
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 1.0e-18 99.0 79 58.2
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 1.0e-18 99.0 81 50.6
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 1.3e-18 98.6 81 56.8
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 2.3e-18 97.8 82 54.9
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 2.3e-18 97.8 67 61.2
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 3.0e-18 97.4 72 63.9
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 3.0e-18 97.4 82 54.9
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 5.1e-18 96.7 70 67.1
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 6.6e-18 96.3 81 54.3
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 6.6e-18 96.3 67 67.2
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 6.6e-18 96.3 82 51.2
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 1.1e-17 95.5 64 70.3
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 1.1e-17 95.5 67 65.7
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 1.5e-17 95.1 79 58.2
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 1.9e-17 94.7 81 54.3
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 3.3e-17 94.0 66 68.2
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 4.3e-17 93.6 68 61.8
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 4.3e-17 93.6 67 62.7
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 7.3e-17 92.8 61 62.3
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 7.3e-17 92.8 85 51.8
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 9.5e-17 92.4 67 65.7
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 1.2e-16 92.0 67 59.7
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 1.2e-16 92.0 67 59.7
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 1.6e-16 91.7 70 61.4
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.6e-16 91.7 67 62.7
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 1.6e-16 91.7 65 66.2
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 2.1e-16 91.3 81 46.9
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 2.1e-16 91.3 83 49.4
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 3.6e-16 90.5 67 58.2
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 3.6e-16 90.5 71 60.6
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 4.7e-16 90.1 80 52.5
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 8.1e-16 89.4 66 62.1
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 8.1e-16 89.4 81 49.4
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 1.1e-15 89.0 67 58.2
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 1.1e-15 89.0 67 58.2
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 1.4e-15 88.6 78 50.0
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 1.8e-15 88.2 67 59.7
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.8e-15 88.2 66 60.6
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 4.0e-15 87.0 78 51.3
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 5.2e-15 86.7 66 59.1
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 1.2e-14 85.5 54 72.2
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 1.5e-14 85.1 80 48.8
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 2.6e-14 84.3 67 53.7
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 3.4e-14 84.0 67 53.7
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 7.6e-14 82.8 67 52.2
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 9.9e-14 82.4 81 50.6
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.2e-13 81.3 81 49.4
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 2.2e-13 81.3 49 79.6
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 4.9e-13 80.1 80 51.2
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 6.4e-13 79.7 78 51.3
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.1e-12 79.0 61 55.7
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.4e-12 78.6 78 50.0
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 7.1e-12 76.3 48 75.0
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 7.1e-12 76.3 48 75.0
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 7.1e-12 76.3 48 75.0
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 7.1e-12 76.3 81 45.7
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 7.1e-12 76.3 48 70.8
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 9.2e-12 75.9 80 51.2
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 4.6e-11 73.6 46 76.1
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 4.6e-11 73.6 48 75.0
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 6.0e-11 73.2 46 76.1
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 7.8e-11 72.8 79 46.8
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.7e-10 71.6 51 60.8
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.7e-10 71.6 51 60.8
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.3e-10 71.2 80 48.8
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 2.3e-10 71.2 79 46.8
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 2.3e-10 71.2 46 71.7
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 6.6e-10 69.7 44 70.5
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 1.5e-09 68.6 76 40.8
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 1.9e-09 68.2 50 62.0
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 7.3e-09 66.2 44 70.5
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 7.3e-09 66.2 73 39.7
Lalb_Chr06g0171701 Lupinus albus HOM05D005674 ORTHO05D007015 1.8e-07 61.6 44 65.9
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 6.9e-07 59.7 47 59.6
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 4.4e-06 57.0 80 41.2


User provided reference genes

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