Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 4.0e-144 515.4 257 100.0
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 3.2e-117 426.0 242 88.4
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 2.4e-109 399.8 259 81.1
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 6.5e-102 375.2 257 77.8
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 3.5e-100 369.4 300 67.3
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 1.3e-86 324.3 182 89.6
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 1.0e-83 314.7 201 79.6
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 6.8e-51 205.7 253 46.6
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 1.7e-49 201.1 236 49.6
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 4.5e-47 193.0 203 52.2
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 2.9e-46 190.3 202 52.5
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 2.9e-46 190.3 202 52.5
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 1.5e-45 188.0 205 51.2
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 2.5e-45 187.2 203 50.2
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 5.2e-43 179.5 205 51.7
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 1.5e-42 177.9 204 50.5
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.5e-42 177.9 220 49.1
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 5.8e-42 176.0 246 44.7
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 7.5e-42 175.6 205 46.8
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 2.9e-41 173.7 221 44.3
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 6.4e-41 172.6 204 49.0
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 1.4e-40 171.4 201 47.8
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 2.4e-40 170.6 215 44.7
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 4.1e-40 169.9 200 50.5
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 1.6e-39 167.9 180 49.4
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 3.5e-39 166.8 176 49.4
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 1.7e-38 164.5 202 48.5
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 6.6e-38 162.5 217 44.2
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 1.5e-37 161.4 200 47.0
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 1.9e-37 161.0 201 46.8
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 2.1e-36 157.5 228 42.5
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 2.8e-36 157.1 224 43.8
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 1.1e-35 155.2 138 55.1
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 2.6e-34 150.6 211 44.5
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 3.7e-33 146.7 178 43.8
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 6.4e-33 146.0 162 50.6
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 1.9e-32 144.4 165 46.1
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 4.1e-32 143.3 179 43.6
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 5.4e-32 142.9 176 43.8
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 7.0e-32 142.5 206 41.7
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 7.0e-32 142.5 175 47.4
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.6e-31 141.4 177 43.5
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 2.1e-31 141.0 178 42.7
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 1.3e-30 138.3 201 42.8
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 3.9e-30 136.7 237 36.7
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 5.1e-30 136.3 200 41.5
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 5.1e-30 136.3 178 44.9
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.1e-29 135.2 171 43.3
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 1.1e-29 135.2 168 41.7
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 1.5e-29 134.8 193 40.9
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 4.3e-29 133.3 190 42.6
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 7.3e-29 132.5 189 41.3
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 9.5e-29 132.1 174 40.2
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.2e-28 131.7 189 41.3
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 2.1e-28 131.0 217 41.0
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 4.7e-28 129.8 215 40.5
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 8.1e-28 129.0 172 40.7
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 3.1e-27 127.1 138 49.3
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 4.0e-27 126.7 180 41.7
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 5.2e-27 126.3 174 42.0
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 5.2e-27 126.3 197 39.1
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 1.7e-25 121.3 190 41.1
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 1.7e-25 121.3 176 38.1
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 1.7e-25 121.3 204 38.2
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 1.4e-24 118.2 165 40.6
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 1.9e-24 117.9 184 40.2
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 4.1e-24 116.7 208 38.0
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 7.1e-24 115.9 176 42.0
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 9.2e-24 115.5 166 36.7
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 1.2e-23 115.2 164 41.5
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 1.6e-23 114.8 212 37.7
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 2.7e-23 114.0 213 37.1
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 4.6e-23 113.2 140 46.4
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 1.0e-22 112.1 137 46.7
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 1.3e-22 111.7 167 41.3
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 1.3e-22 111.7 167 41.3
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 2.3e-22 110.9 133 45.9
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 1.1e-21 108.6 180 39.4
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 1.5e-21 108.2 167 39.5
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 2.5e-21 107.5 167 38.3
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 5.6e-21 106.3 180 35.6
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 1.6e-20 104.8 180 38.3
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 2.1e-20 104.4 130 43.1
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 2.8e-20 104.0 179 35.8
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 4.7e-20 103.2 179 35.8
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 4.7e-20 103.2 180 37.2
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 8.1e-20 102.4 98 54.1
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 1.8e-19 101.3 195 35.4
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 1.8e-19 101.3 179 34.6
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 2.4e-19 100.9 180 36.1
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 1.7e-17 94.7 154 36.4
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 1.0e-14 85.5 124 40.3
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.0e-14 85.5 124 40.3
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 3.0e-14 84.0 131 37.4
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 3.9e-14 83.6 119 39.5
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 5.1e-14 83.2 147 37.4
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 6.6e-14 82.8 131 36.6
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 8.7e-14 82.4 130 36.9
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 3.6e-12 77.0 152 30.9
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 2.4e-11 74.3 116 32.8
Nn2g14540 Nelumbo nucifera HOM05D007281 ORTHO05D009241 1.1e-08 65.5 96 38.5


User provided reference genes

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