Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.2e-142 510.0 289 100.0
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 6.2e-131 471.1 290 94.5
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 3.2e-127 458.8 290 91.7
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 2.6e-97 359.4 295 76.6
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.3e-91 340.5 288 76.0
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 2.6e-89 332.8 294 71.4
Solyc01g106180.3 Solanum lycopersicum HOM05D009304 ORTHO05D003109 9.7e-76 287.7 169 92.9
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 2.2e-72 276.6 296 62.8
Sopen12g021050 Solanum pennellii HOM05D009304 ORTHO05D003109 7.4e-68 261.5 169 87.0
CAN.G996.13 Capsicum annuum HOM05D009304 ORTHO05D003109 1.1e-58 231.1 301 59.5
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 8.9e-45 184.9 326 45.4
Solyc08g045770.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.3e-40 170.2 99 93.9
Solyc11g043180.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 5.0e-40 169.1 99 92.9
Solyc04g007740.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.5e-39 166.8 99 91.9
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 2.8e-38 163.3 319 45.1
Solyc09g082960.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 3.5e-33 146.4 92 88.0
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 8.9e-29 131.7 279 42.7
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.5e-28 131.0 316 42.7
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 5.8e-28 129.0 324 41.7
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 7.1e-26 122.1 271 44.3
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 6.6e-24 115.5 316 39.2
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 1.5e-23 114.4 274 43.4
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 1.6e-22 110.9 269 42.0
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 4.0e-21 106.3 326 37.1
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 1.5e-20 104.4 320 41.9
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 5.8e-20 102.4 330 36.1
Oeu025512.1 Olea europaea HOM05D009304 ORTHO05D003109 7.6e-20 102.1 297 35.4
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 4.9e-19 99.4 272 38.6
Hma1.2p1_0280F.1_g112760 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 6.4e-19 99.0 186 47.3
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 7.1e-18 95.5 294 42.2
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.6e-17 92.8 310 38.4
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 4.6e-17 92.8 330 34.5
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 7.8e-17 92.0 314 39.8
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 2.3e-16 90.5 329 36.2
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.9e-16 89.7 310 36.8
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.6e-16 89.0 315 37.1
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.9e-15 87.4 320 37.2
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.9e-15 87.4 313 35.8
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.9e-15 87.4 302 35.1
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 1.9e-15 87.4 298 35.6
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 1.9e-15 87.4 302 35.8
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 2.5e-15 87.0 329 32.8
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 4.3e-15 86.3 313 37.4
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 5.6e-15 85.9 315 36.8
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.2e-14 84.7 312 34.6
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 1.2e-14 84.7 313 37.4
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 2.1e-14 84.0 309 40.8
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.6e-14 83.2 269 38.3
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 4.7e-14 82.8 312 38.5
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 8.1e-14 82.0 285 35.4
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.1e-13 81.6 311 33.1
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.8e-13 80.9 200 42.5
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 3.1e-13 80.1 341 33.7
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 6.8e-13 79.0 333 32.1
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 1.5e-12 77.8 324 36.7
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.0e-12 77.4 331 32.9
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 2.6e-12 77.0 315 34.9
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 2.6e-12 77.0 324 33.3
Lsat_1_v5_gn_8_132261 Lactuca sativa HOM05D009304 ORTHO05D003109 7.6e-12 75.5 293 36.2
MSTRG.14193 Avicennia marina HOM05D033380 ORTHO05D026975 1.3e-11 74.7 290 32.8
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 1.3e-11 74.7 310 34.5
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 1.3e-11 74.7 328 33.2
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.9e-11 73.6 298 33.2
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.9e-11 73.6 306 34.6
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.9e-11 73.6 306 34.6
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 3.8e-11 73.2 335 33.1
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 3.8e-11 73.2 324 32.1
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 3.8e-11 73.2 298 33.2
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 3.8e-11 73.2 304 36.2
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.9e-11 72.8 303 34.3
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.9e-11 72.8 303 34.3
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 4.9e-11 72.8 337 33.5
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 6.4e-11 72.4 331 33.8
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 8.4e-11 72.0 315 35.2
Migut.H01045 Erythranthe guttata HOM05D009304 ORTHO05D026975 8.4e-11 72.0 300 32.7
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 1.1e-10 71.6 309 33.7
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.1e-10 71.6 302 32.5
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 1.1e-10 71.6 334 32.6
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.1e-10 71.6 342 31.6
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.4e-10 71.2 311 31.5
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 1.4e-10 71.2 326 33.1
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.4e-10 71.2 314 33.8
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.4e-10 71.2 314 33.8
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 1.9e-10 70.9 313 30.4
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.9e-10 70.9 331 33.2
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 3.2e-10 70.1 310 31.9
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 5.4e-10 69.3 337 35.3
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 5.4e-10 69.3 317 32.5
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 7.1e-10 68.9 298 34.6
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 1.6e-09 67.8 310 34.2
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 2.1e-09 67.4 286 32.5
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 2.7e-09 67.0 311 34.1
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.7e-09 67.0 298 32.6
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 3.5e-09 66.6 295 37.6
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 4.6e-09 66.2 328 32.6
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 4.6e-09 66.2 298 33.2
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 6.0e-09 65.9 307 32.2
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 6.0e-09 65.9 312 35.6
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 7.8e-09 65.5 322 34.8
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 1.0e-08 65.1 157 42.0
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 1.3e-08 64.7 330 31.8
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 1.3e-08 64.7 324 30.6
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 1.7e-08 64.3 195 39.5
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 2.3e-08 63.9 295 31.2
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 3.0e-08 63.5 327 33.3
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 3.0e-08 63.5 313 31.9
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 5.1e-08 62.8 324 31.8
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 6.6e-08 62.4 305 33.1
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 6.6e-08 62.4 281 33.1
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 8.7e-08 62.0 325 33.8
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 1.1e-07 61.6 322 31.7
Thhalv10026095m.g Eutrema salsugineum HOM05D012054 ORTHO05D013946 1.5e-07 61.2 292 30.5
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 1.5e-07 61.2 313 29.1
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 3.3e-07 60.1 345 31.3
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 3.3e-07 60.1 305 31.1
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 3.3e-07 60.1 309 30.1
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 3.3e-07 60.1 328 32.0
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 7.3e-07 58.9 332 30.4
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 9.6e-07 58.5 333 32.1
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 1.3e-06 58.2 268 31.3
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.6e-06 57.8 279 32.6
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.6e-06 57.8 297 32.0
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 1.6e-06 57.8 268 30.2
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 2.1e-06 57.4 298 28.9
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 2.8e-06 57.0 310 35.8
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 3.6e-06 56.6 313 31.3
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 3.6e-06 56.6 302 30.1


User provided reference genes

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