Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.6e-189 666.0 355 100.0
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.0e-183 646.7 360 96.9
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 6.6e-135 484.6 370 74.9
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.5e-86 323.9 379 54.9
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.2e-83 314.3 366 56.0
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 1.1e-76 291.2 391 50.9
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 5.3e-76 288.9 379 50.9
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 5.9e-75 285.4 395 47.6
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 5.0e-74 282.3 390 48.5
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 6.5e-74 282.0 403 47.6
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.9e-73 280.4 406 46.6
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.9e-73 280.4 382 50.3
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.2e-72 277.7 361 48.8
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.7e-72 276.6 384 50.3
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 2.7e-72 276.6 400 47.8
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 3.6e-72 276.2 388 48.2
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.6e-72 276.2 402 47.8
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.6e-72 276.2 390 50.5
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 4.7e-72 275.8 419 46.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.0e-71 274.6 398 47.7
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 6.8e-71 271.9 408 46.6
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 2.6e-70 270.0 375 48.3
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 3.4e-70 269.6 397 47.9
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 5.7e-70 268.9 382 47.6
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 9.8e-70 268.1 389 47.3
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 1.3e-69 267.7 378 47.1
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 1.3e-69 267.7 377 47.5
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.3e-69 267.7 412 45.6
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.7e-69 267.3 371 47.4
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 2.8e-69 266.5 424 45.0
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 8.3e-69 265.0 403 46.4
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.1e-68 264.6 382 46.9
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.4e-68 263.5 211 69.2
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 3.1e-68 263.1 406 45.1
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 5.4e-68 262.3 410 45.4
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 7.0e-68 261.9 209 67.5
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 7.0e-68 261.9 386 48.4
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.0e-66 258.1 381 45.7
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.3e-66 257.7 353 51.0
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.7e-66 257.3 383 46.7
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.8e-66 256.1 408 45.8
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 5.0e-66 255.8 389 45.8
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.5e-65 254.2 419 43.0
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 9.5e-65 251.5 426 42.5
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.1e-64 250.4 386 46.4
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 2.8e-64 250.0 249 58.2
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 4.7e-64 249.2 395 45.3
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.0e-63 248.1 365 46.6
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 2.3e-63 246.9 384 44.5
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 4.0e-63 246.1 434 43.1
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 4.0e-63 246.1 387 44.2
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 5.2e-63 245.7 205 63.4
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 8.9e-63 245.0 258 57.4
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.2e-62 244.6 435 42.8
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 2.6e-62 243.4 446 41.0
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 3.4e-62 243.0 377 45.1
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 4.9e-61 239.2 304 50.0
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.4e-60 237.7 367 44.7
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 4.1e-60 236.1 370 44.3
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 7.0e-60 235.3 397 42.8
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 9.2e-60 235.0 211 64.0
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.7e-59 233.4 212 62.3
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 5.9e-59 232.3 250 55.6
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.7e-58 230.7 388 43.0
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.7e-58 230.7 398 41.0
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 3.9e-58 229.6 367 43.9
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 5.0e-58 229.2 422 41.5
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 5.0e-58 229.2 354 44.1
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.5e-57 226.9 416 41.1
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 2.5e-57 226.9 367 44.7
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.5e-57 226.9 387 42.4
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 3.3e-57 226.5 293 48.1
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 4.3e-57 226.1 406 43.8
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 9.5e-57 224.9 171 68.4
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 1.2e-56 224.6 363 43.3
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.6e-56 224.2 431 39.7
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 2.8e-56 223.4 403 41.4
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 3.6e-56 223.0 363 43.0
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 6.1e-56 222.2 422 39.3
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 8.0e-56 221.9 425 40.5
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.0e-55 221.5 414 39.9
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 1.5e-54 217.6 417 40.0
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 9.8e-54 214.9 202 58.4
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 6.4e-53 212.2 228 52.6
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 8.3e-53 211.8 395 40.3
PGSC0003DMG400032822 Solanum tuberosum HOM05D005116 ORTHO05D005937 1.1e-52 211.5 120 91.7
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 2.0e-51 207.2 214 57.5
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 3.9e-50 203.0 581 32.9
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 6.8e-47 192.2 426 37.3
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 8.9e-47 191.8 387 40.1
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 2.0e-46 190.7 365 40.8
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 2.6e-46 190.3 376 37.8
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 4.4e-46 189.5 307 45.0
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 9.2e-44 181.8 292 43.5
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.2e-43 181.4 367 40.1
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 3.9e-42 176.4 207 50.7
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 5.1e-42 176.0 163 58.9
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 1.9e-41 174.1 249 49.0
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 2.1e-40 170.6 158 57.6
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 2.8e-40 170.2 360 36.7
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.5e-38 164.5 133 61.7
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.4e-38 163.3 170 55.3
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 1.3e-37 161.4 357 36.1
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.9e-36 157.5 367 34.3
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 7.1e-36 155.6 377 35.3
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 2.3e-34 150.6 373 35.9
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 3.0e-34 150.2 372 35.5
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 3.9e-34 149.8 373 35.4
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.3e-33 146.4 143 59.4
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 6.2e-32 142.5 146 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.5e-30 137.9 396 30.6
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 5.8e-30 136.0 243 41.6
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 6.4e-29 132.5 148 46.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 3.0e-26 123.6 129 49.6
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 3.0e-26 123.6 294 36.4
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 9.6e-25 118.6 127 48.0
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.8e-23 114.4 82 75.6
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.4e-22 110.2 240 36.7
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 2.2e-21 107.5 239 40.2
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.1e-20 105.1 76 67.1
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.9e-20 104.4 116 55.2
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 7.1e-20 102.4 93 57.0
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 9.3e-20 102.1 219 34.7
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 7.9e-19 99.0 209 34.9
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.3e-16 91.7 188 36.2
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 1.6e-16 91.3 68 66.2
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.4e-15 88.2 179 38.5
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 1.3e-13 81.6 148 37.8
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 5.5e-12 76.3 106 40.6
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-11 75.1 213 31.0
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 1.2e-11 75.1 309 27.2
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 2.7e-11 73.9 282 33.0
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 5.1e-10 69.7 44 68.2
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 2.5e-09 67.4 316 25.9
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 9.0e-07 58.9 285 28.8
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 1.2e-06 58.5 27 96.3
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 2.0e-06 57.8 55 52.7
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 2.6e-06 57.4 86 36.0
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 7.6e-06 55.8 56 50.0
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 1.0e-05 55.5 84 35.7


User provided reference genes

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