Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 2.6e-104 382.1 195 100.0
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 1.4e-102 376.3 195 99.0
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 2.9e-100 368.6 195 96.9
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 6.1e-90 334.3 196 88.3
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 5.7e-88 327.8 204 84.3
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 2.9e-84 315.5 201 82.1
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 8.6e-68 260.8 192 74.0
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 1.8e-65 253.1 195 68.2
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 5.7e-64 248.1 201 66.2
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 4.9e-63 245.0 195 68.2
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 2.4e-62 242.7 196 65.8
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 2.0e-61 239.6 196 65.3
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.9e-59 233.0 190 67.4
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.9e-59 233.0 190 67.4
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 3.3e-59 232.3 199 63.8
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 4.3e-59 231.9 194 66.0
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 2.8e-58 229.2 193 62.7
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 1.1e-57 227.3 194 63.9
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 1.8e-57 226.5 197 63.5
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 5.2e-57 224.9 138 73.2
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 6.8e-57 224.6 193 60.1
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 6.8e-57 224.6 190 65.8
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 1.5e-56 223.4 138 75.4
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 7.5e-56 221.1 191 60.7
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 1.3e-55 220.3 204 60.8
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 1.3e-55 220.3 196 60.2
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 2.2e-55 219.5 138 72.5
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 4.9e-55 218.4 207 59.9
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 6.4e-55 218.0 186 61.3
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 8.3e-55 217.6 195 56.9
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 8.3e-55 217.6 197 60.9
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 8.3e-55 217.6 139 73.4
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 8.3e-55 217.6 184 65.2
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.1e-54 217.2 193 59.6
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 1.1e-54 217.2 190 60.5
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 1.4e-54 216.9 186 58.6
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 1.4e-54 216.9 186 61.3
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 1.9e-54 216.5 188 59.6
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 1.9e-54 216.5 192 60.4
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 2.4e-54 216.1 194 61.3
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 2.4e-54 216.1 126 78.6
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 2.4e-54 216.1 186 61.3
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 3.2e-54 215.7 188 60.1
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 3.2e-54 215.7 192 60.4
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 3.2e-54 215.7 195 61.5
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 3.2e-54 215.7 186 59.1
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 4.1e-54 215.3 193 58.5
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 5.4e-54 214.9 189 58.2
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 5.4e-54 214.9 186 59.1
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 9.2e-54 214.2 178 62.4
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 1.2e-53 213.8 195 60.0
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 1.2e-53 213.8 196 60.2
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 1.2e-53 213.8 126 77.8
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 1.6e-53 213.4 194 58.2
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 1.6e-53 213.4 196 59.2
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 2.0e-53 213.0 194 58.8
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 2.0e-53 213.0 195 59.5
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 6.0e-53 211.5 194 58.2
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 1.0e-52 210.7 126 76.2
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 1.0e-52 210.7 138 73.9
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 1.7e-52 209.9 160 66.9
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 2.3e-52 209.5 126 75.4
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 2.3e-52 209.5 197 60.4
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 2.3e-52 209.5 195 59.0
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 2.3e-52 209.5 200 59.5
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 2.3e-52 209.5 201 57.7
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 3.0e-52 209.1 126 75.4
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 5.0e-52 208.4 187 59.4
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 5.0e-52 208.4 126 75.4
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 5.0e-52 208.4 137 69.3
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 6.6e-52 208.0 126 75.4
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 6.6e-52 208.0 126 74.6
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 6.6e-52 208.0 197 59.9
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 8.6e-52 207.6 197 59.9
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 1.1e-51 207.2 197 59.9
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 1.1e-51 207.2 126 75.4
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 1.1e-51 207.2 191 59.2
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 1.5e-51 206.8 187 59.9
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.9e-51 206.5 214 53.7
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 1.9e-51 206.5 190 57.4
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 2.5e-51 206.1 126 73.8
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 2.5e-51 206.1 197 57.4
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 2.5e-51 206.1 169 63.9
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 3.3e-51 205.7 197 59.9
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 9.5e-51 204.1 192 57.3
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 2.8e-50 202.6 179 59.8
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 4.7e-50 201.8 148 64.9
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 8.1e-50 201.1 193 60.6
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 1.1e-49 200.7 193 60.1
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 5.2e-49 198.4 193 54.9
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 8.9e-49 197.6 136 70.6
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 1.2e-48 197.2 198 55.6
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 3.4e-48 195.7 160 61.2
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 3.4e-48 195.7 134 67.2
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 7.5e-48 194.5 143 60.8
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 2.2e-47 193.0 111 78.4
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 7.1e-46 188.0 228 50.4
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 1.2e-45 187.2 116 75.9
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 1.2e-45 187.2 198 53.5
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 2.1e-45 186.4 240 47.1
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 3.5e-45 185.7 167 59.3
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 4.6e-45 185.3 116 77.6
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 8.6e-44 181.0 153 67.3
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 3.3e-43 179.1 114 66.7
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 5.6e-43 178.3 123 63.4
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 4.7e-42 175.3 120 66.7
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 6.8e-41 171.4 112 68.8
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 2.6e-40 169.5 155 63.2
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 4.9e-39 165.2 115 67.0
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 1.1e-38 164.1 91 81.3
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 1.6e-37 160.2 160 61.2
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 1.1e-35 154.1 137 51.8
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 1.5e-35 153.7 122 61.5
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 3.3e-35 152.5 119 67.2
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 3.3e-35 152.5 125 56.8
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 3.1e-33 146.0 103 68.9
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 6.9e-33 144.8 109 60.6
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 2.0e-32 143.3 144 54.2
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 2.0e-32 143.3 148 54.7
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 4.2e-30 135.6 90 66.7
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 6.0e-29 131.7 73 83.6
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 1.7e-28 130.2 111 55.0
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 1.9e-27 126.7 84 72.6
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 7.3e-27 124.8 124 44.4
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 5.3e-25 118.6 115 51.3
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 7.1e-22 108.2 97 49.5
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 9.6e-19 97.8 111 43.2
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 9.6e-19 97.8 92 55.4
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 2.1e-18 96.7 113 52.2
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 1.3e-15 87.4 128 45.3
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 1.3e-15 87.4 112 41.1
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 3.5e-13 79.3 134 41.8
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 4.0e-09 65.9 37 78.4
Hma1.2p1_3430F.1_g335990 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 1.2e-08 64.3 91 52.7
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 5.8e-08 62.0 48 64.6
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.5e-06 56.6 43 60.5


User provided reference genes

Program Settings