Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 5.0e-38 160.6 80 100.0
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 3.7e-33 144.4 83 91.6
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 3.8e-30 134.4 85 88.2
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 6.1e-20 100.5 88 71.6
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.5e-18 95.9 85 67.1
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 1.7e-17 92.4 70 68.6
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 2.4e-16 88.6 77 67.5
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 2.2e-14 82.0 78 57.7
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.9e-14 81.6 79 59.5
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 6.5e-14 80.5 65 64.6
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 8.5e-14 80.1 74 62.2
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-13 79.7 73 57.5
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-13 79.7 73 57.5
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-13 79.7 73 57.5
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 1.1e-13 79.7 72 62.5
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.5e-13 78.6 72 58.3
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 2.5e-13 78.6 70 61.4
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.2e-13 78.2 77 61.0
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 4.2e-13 77.8 72 58.3
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 5.5e-13 77.4 72 58.3
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 7.2e-13 77.0 75 58.7
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.1e-12 75.5 72 55.6
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.1e-12 75.5 72 55.6
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 4.7e-12 74.3 82 58.5
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 6.1e-12 73.9 73 58.9
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 6.1e-12 73.9 82 57.3
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 2.3e-11 72.0 49 71.4
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 4.0e-11 71.2 88 50.0
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 4.0e-11 71.2 75 53.3
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 5.2e-11 70.9 72 52.8
Nitab4.5_0001134g0060 Nicotiana tabacum HOM05D007156 ORTHO05D003871 6.7e-11 70.5 76 59.2
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 8.8e-11 70.1 59 62.7
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.8e-11 70.1 59 62.7
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.8e-11 70.1 59 62.7
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.8e-11 70.1 59 62.7
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.8e-11 70.1 59 62.7
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 8.8e-11 70.1 43 74.4
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 8.8e-11 70.1 59 62.7
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 1.1e-10 69.7 41 80.5
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.5e-10 69.3 70 55.7
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.5e-10 69.3 81 49.4
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.5e-10 69.3 38 81.6
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.5e-10 69.3 38 81.6
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 1.5e-10 69.3 60 58.3
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.0e-10 68.9 72 52.8
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 2.6e-10 68.6 68 57.4
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 2.6e-10 68.6 59 61.0
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 2.6e-10 68.6 62 59.7
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 3.3e-10 68.2 75 52.0
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.3e-10 68.2 72 52.8
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.3e-10 68.2 58 62.1
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 3.3e-10 68.2 70 54.3
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 4.4e-10 67.8 37 81.1
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 5.7e-10 67.4 70 58.6
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 5.7e-10 67.4 70 52.9
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 7.5e-10 67.0 69 59.4
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 7.5e-10 67.0 65 56.9
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 1.3e-09 66.2 83 48.2
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 1.3e-09 66.2 55 60.0
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 1.3e-09 66.2 71 50.7
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 1.7e-09 65.9 69 59.4
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 2.2e-09 65.5 41 75.6
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 2.2e-09 65.5 70 50.0
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 4.8e-09 64.3 69 52.2
Lsat_1_v5_gn_8_130461 Lactuca sativa HOM05D025642 ORTHO05D003871 1.1e-08 63.2 67 50.7
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 1.1e-08 63.2 67 50.7
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 1.1e-08 63.2 71 50.7
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 1.4e-08 62.8 68 50.0
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 1.8e-08 62.4 69 52.2
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 2.4e-08 62.0 38 71.1
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 3.1e-08 61.6 55 52.7
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.1e-08 61.6 80 45.0
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 4.1e-08 61.2 62 53.2
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 4.1e-08 61.2 58 58.6
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 4.1e-08 61.2 41 68.3
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 5.3e-08 60.8 74 44.6
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 9.1e-08 60.1 73 50.7
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 9.1e-08 60.1 37 75.7
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.2e-07 59.7 37 67.6
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 1.2e-07 59.7 61 54.1
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 1.6e-07 59.3 54 63.0
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.6e-07 59.3 52 53.8
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 1.6e-07 59.3 77 39.0
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.7e-07 58.5 44 56.8
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 2.7e-07 58.5 91 47.3
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 3.5e-07 58.2 56 57.1
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 3.5e-07 58.2 69 47.8
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 3.5e-07 58.2 76 43.4
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 3.5e-07 58.2 78 39.7
Os07g0549100 Oryza sativa ssp. japonica HOM05D052182 ORTHO05D003871 4.5e-07 57.8 53 54.7
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 4.5e-07 57.8 61 44.3
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 5.9e-07 57.4 57 47.4
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 5.9e-07 57.4 45 64.4
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 7.7e-07 57.0 79 44.3
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 7.7e-07 57.0 41 61.0
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 7.7e-07 57.0 56 50.0
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 7.7e-07 57.0 56 51.8
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 7.7e-07 57.0 73 49.3
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 7.7e-07 57.0 78 38.5
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 1.3e-06 56.2 73 43.8
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 1.3e-06 56.2 55 47.3
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 1.7e-06 55.8 59 52.5
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.7e-06 55.8 74 45.9
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 2.2e-06 55.5 43 60.5
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 2.2e-06 55.5 53 49.1
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.2e-06 55.5 53 49.1
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.2e-06 55.5 53 49.1
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.2e-06 55.5 53 49.1
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 2.2e-06 55.5 63 46.0
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 2.2e-06 55.5 71 46.5
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 2.9e-06 55.1 34 70.6
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 3.8e-06 54.7 42 52.4
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 3.8e-06 54.7 42 52.4
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 3.8e-06 54.7 42 52.4
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 3.8e-06 54.7 58 46.6
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 3.8e-06 54.7 42 52.4
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 3.8e-06 54.7 60 43.3
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 5.0e-06 54.3 35 60.0
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 5.0e-06 54.3 75 45.3
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 5.0e-06 54.3 65 44.6
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 5.0e-06 54.3 37 62.2
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 6.5e-06 53.9 34 70.6
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 6.5e-06 53.9 75 45.3
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 8.5e-06 53.5 41 63.4
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 8.5e-06 53.5 37 56.8


User provided reference genes

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