Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 7.2e-59 230.3 113 100.0
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 3.4e-40 168.3 86 95.3
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 2.9e-36 155.2 82 93.9
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 8.8e-33 143.7 82 84.1
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.2e-32 143.3 82 82.9
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 3.4e-32 141.7 82 82.9
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 9.8e-32 140.2 82 81.7
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 5.2e-25 117.9 108 55.6
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 5.2e-25 117.9 86 62.8
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.2e-24 116.7 86 64.0
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 2.6e-24 115.5 86 62.8
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 4.4e-24 114.8 86 61.6
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 7.5e-24 114.0 86 65.1
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 1.3e-23 113.2 83 66.3
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 1.3e-23 113.2 88 61.4
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.3e-23 113.2 87 65.5
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 1.7e-23 112.8 88 63.6
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 2.2e-23 112.5 88 61.4
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.2e-23 112.5 86 61.6
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.9e-23 112.1 86 61.6
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 4.9e-23 111.3 87 63.2
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 6.4e-23 110.9 90 61.1
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 8.3e-23 110.5 90 62.2
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 8.3e-23 110.5 87 58.6
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 8.3e-23 110.5 88 58.0
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 1.1e-22 110.2 84 61.9
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.1e-22 110.2 86 61.6
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 1.1e-22 110.2 89 59.6
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 1.8e-22 109.4 88 62.5
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.8e-22 109.4 82 61.0
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.8e-22 109.4 117 50.4
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 2.4e-22 109.0 86 61.6
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 3.2e-22 108.6 82 63.4
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 3.2e-22 108.6 82 59.8
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 4.1e-22 108.2 86 57.0
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 5.4e-22 107.8 84 63.1
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 5.4e-22 107.8 86 60.5
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 7.0e-22 107.5 86 57.0
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 9.2e-22 107.1 82 62.2
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 1.2e-21 106.7 89 58.4
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 1.2e-21 106.7 88 59.1
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.2e-21 106.7 82 64.6
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 1.6e-21 106.3 88 58.0
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.6e-21 106.3 88 58.0
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.0e-21 105.9 87 56.3
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 2.7e-21 105.5 82 61.0
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 3.5e-21 105.1 88 59.1
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 5.9e-21 104.4 90 56.7
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 7.8e-21 104.0 88 58.0
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 7.8e-21 104.0 88 59.1
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 7.8e-21 104.0 87 58.6
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.0e-20 103.6 88 58.0
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 1.3e-20 103.2 86 55.8
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 1.7e-20 102.8 81 64.2
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 2.3e-20 102.4 86 55.8
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 3.0e-20 102.1 89 52.8
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 3.9e-20 101.7 87 58.6
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 3.9e-20 101.7 83 59.0
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 8.6e-20 100.5 74 62.2
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 8.6e-20 100.5 88 55.7
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 8.6e-20 100.5 88 55.7
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 8.6e-20 100.5 88 55.7
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 8.6e-20 100.5 90 54.4
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.5e-19 99.8 88 55.7
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.5e-19 99.8 84 57.1
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.9e-19 99.4 84 56.0
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.9e-19 99.4 88 55.7
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.9e-19 99.4 88 55.7
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.9e-19 99.4 71 60.6
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 1.9e-19 99.4 82 58.5
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 1.9e-19 99.4 82 58.5
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 3.3e-19 98.6 79 58.2
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 3.3e-19 98.6 102 49.0
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 3.3e-19 98.6 86 52.3
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 3.3e-19 98.6 86 53.5
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 4.3e-19 98.2 83 55.4
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 5.6e-19 97.8 86 52.3
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 9.5e-19 97.1 107 47.7
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 9.5e-19 97.1 84 54.8
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 2.8e-18 95.5 86 51.2
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 4.7e-18 94.7 86 54.7
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 4.7e-18 94.7 86 52.3
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 6.2e-18 94.4 86 51.2
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 6.2e-18 94.4 86 52.3
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 8.0e-18 94.0 82 56.1
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 8.0e-18 94.0 82 53.7
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 1.1e-17 93.6 70 64.3
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 1.1e-17 93.6 86 51.2
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.4e-17 93.2 82 56.1
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.8e-17 92.8 86 50.0
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 1.8e-17 92.8 86 50.0
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.8e-17 92.8 86 50.0
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 3.1e-17 92.0 69 58.0
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 4.0e-17 91.7 82 51.2
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 6.8e-17 90.9 90 53.3
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 8.9e-17 90.5 69 58.0
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 1.2e-16 90.1 73 58.9
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 1.5e-16 89.7 57 73.7
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 9.8e-16 87.0 86 51.2
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 9.8e-16 87.0 76 52.6
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 8.3e-15 84.0 84 50.0
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 8.3e-15 84.0 80 48.8
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 8.3e-15 84.0 84 51.2
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 1.4e-14 83.2 81 53.1
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.9e-14 82.8 71 54.9
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 1.6e-13 79.7 56 66.1
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.3e-12 76.6 89 44.9
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 2.3e-12 75.9 80 50.0
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 2.3e-12 75.9 90 45.6
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 5.0e-12 74.7 90 42.2
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 1.9e-11 72.8 92 42.4
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 1.9e-11 72.8 91 41.8
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 3.3e-11 72.0 68 51.5
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 4.3e-11 71.6 95 45.3
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 7.3e-11 70.9 85 41.2
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 7.3e-11 70.9 85 41.2
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 1.2e-10 70.1 55 61.8
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 1.6e-10 69.7 91 44.0
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 1.6e-10 69.7 85 41.2
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 4.7e-10 68.2 92 40.2
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 4.7e-10 68.2 54 53.7
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 4.7e-10 68.2 54 53.7
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 6.2e-10 67.8 95 38.9
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 8.1e-10 67.4 94 39.4
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 8.1e-10 67.4 54 51.9
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 8.1e-10 67.4 50 60.0
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 8.1e-10 67.4 55 60.0
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 1.8e-09 66.2 83 45.8
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 1.5e-08 63.2 47 55.3
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 2.2e-07 59.3 62 50.0
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 4.9e-07 58.2 44 56.8
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 3.2e-06 55.5 80 37.5
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 3.2e-06 55.5 80 37.5


User provided reference genes

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