Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g052785.1 Solanum lycopersicum HOM05D000005 ORTHO05D011639 2.2e-76 288.9 145 100.0
Solyc07g052790.3 Solanum lycopersicum HOM05D000005 ORTHO05D011639 5.8e-61 237.7 224 61.2
Sopen12g032820 Solanum pennellii HOM05D000005 ORTHO05D011639 7.8e-50 200.7 227 52.4
Solyc12g097010.1 Solanum lycopersicum HOM05D000005 ORTHO05D011639 2.9e-44 182.2 224 49.6
Solyc00g500405.1 Solanum lycopersicum HOM05D000005 ORTHO05D011639 3.9e-41 171.8 155 63.9
CAN.G107.21 Capsicum annuum HOM05D000005 ORTHO05D011639 3.4e-29 132.1 275 37.1
Solyc00g500406.1 Solanum lycopersicum HOM05D000005 ORTHO05D011639 2.1e-26 122.9 62 100.0
CAN.G566.6 Capsicum annuum HOM05D000005 ORTHO05D011639 1.9e-24 116.3 283 32.5
CAN.G566.7 Capsicum annuum HOM05D000005 ORTHO05D011639 1.9e-24 116.3 283 32.5
CAN.G566.9 Capsicum annuum HOM05D000005 ORTHO05D011639 4.3e-24 115.2 280 31.8
CAN.G566.11 Capsicum annuum HOM05D000005 ORTHO05D011639 7.4e-24 114.4 285 31.9
Nitab4.5_0004247g0020 Nicotiana tabacum HOM05D000005 ORTHO05D011639 2.1e-23 112.8 287 32.8
CAN.G107.34 Capsicum annuum HOM05D000005 ORTHO05D011639 6.9e-22 107.8 283 33.2
Solyc07g052770.2 Solanum lycopersicum HOM05D000005 ORTHO05D011639 9.0e-22 107.5 62 87.1
Solyc11g062180.1 Solanum lycopersicum HOM05D000005 ORTHO05D011639 5.8e-21 104.8 152 44.7
Nitab4.5_0002738g0020 Nicotiana tabacum HOM05D000005 ORTHO05D011639 2.9e-20 102.4 144 45.8
CAN.G459.23 Capsicum annuum HOM05D000005 ORTHO05D011639 7.9e-18 94.4 275 30.9
PGSC0003DMG400003445 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.9e-16 89.7 133 45.1
CAN.G107.33 Capsicum annuum HOM05D000005 ORTHO05D011639 5.7e-16 88.2 62 69.4
PGSC0003DMG400029415 Solanum tuberosum HOM05D000005 ORTHO05D000012 7.4e-16 87.8 74 64.9
CAN.G401.1 Capsicum annuum HOM05D000005 ORTHO05D011639 5.5e-11 71.6 93 49.5
Duzib268G0652 Durio zibethinus HOM05D000005 ORTHO05D000012 1.8e-09 66.6 134 34.3
CAN.G1139.7 Capsicum annuum HOM05D000005 ORTHO05D011639 3.0e-09 65.9 86 44.2
MD01G1189200 Malus domestica HOM05D000005 ORTHO05D000012 3.9e-09 65.5 135 34.1
CAN.G107.14 Capsicum annuum HOM05D000005 ORTHO05D011639 6.7e-09 64.7 158 36.7
Gohir.A11G284200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.8e-09 64.3 62 53.2
Gohir.D11G296948 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.8e-09 64.3 62 53.2
Gorai.007G321800 Gossypium raimondii HOM05D000005 ORTHO05D000012 8.8e-09 64.3 62 53.2
Gohir.D11G296916 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.0e-08 63.2 62 53.2
Duzib268G0232 Durio zibethinus HOM05D000005 ORTHO05D000012 2.5e-08 62.8 89 41.6
FvH4_7g04050 Fragaria vesca HOM05D000005 ORTHO05D000012 3.3e-08 62.4 63 47.6
FAN10G3445 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.3e-08 62.4 135 32.6
Gohir.A11G283600 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.3e-08 62.4 105 40.0
Gohir.A11G284400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.7e-08 60.8 62 51.6
Gohir.D11G296800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-07 60.5 62 51.6
Gohir.A11G285360 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.7e-07 60.1 62 50.0
FvH4_2g00570 Fragaria vesca HOM05D000005 ORTHO05D000012 2.8e-07 59.3 62 46.8
MD01G1190700 Malus domestica HOM05D000005 ORTHO05D015660 3.7e-07 58.9 130 31.5
RcHm_v2.0_Chr3g0465111 Rosa chinensis HOM05D000005 ORTHO05D001748 3.7e-07 58.9 62 50.0
PGSC0003DMG400031320 Solanum tuberosum HOM05D000005 ORTHO05D012501 4.8e-07 58.5 63 46.0
CAN.G1788.1 Capsicum annuum HOM05D000005 ORTHO05D000012 6.3e-07 58.2 62 48.4
MD01G1190100 Malus domestica HOM05D000005 ORTHO05D000012 8.2e-07 57.8 135 31.9
Eucgr.E03288 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.1e-06 57.4 61 47.5
Gohir.A11G284300 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.1e-06 57.4 62 48.4
Lj3C243T3 Lonicera japonica HOM05D000005 ORTHO05D001748 1.8e-06 56.6 137 32.1
RcHm_v2.0_Chr7g0225191 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-06 56.6 99 38.4
Atru.chr2.279 Acer truncatum HOM05D000005 ORTHO05D000012 2.4e-06 56.2 156 31.4
Dinv25475 Davidia involucrata HOM05D000005 ORTHO05D000012 3.1e-06 55.8 89 42.7
Prupe.1G160500 Prunus persica HOM05D000005 ORTHO05D000012 3.1e-06 55.8 138 31.2
Gohir.D11G296000 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.1e-06 55.5 148 31.1
Prupe.2G057600 Prunus persica HOM05D000005 ORTHO05D000012 4.1e-06 55.5 62 40.3
QL03p063741 Quercus lobata HOM05D000005 ORTHO05D000012 4.1e-06 55.5 108 32.4
Sopen06g023660 Solanum pennellii HOM05D000005 ORTHO05D000012 4.1e-06 55.5 62 45.2
Dinv01986 Davidia involucrata HOM05D000005 ORTHO05D000012 5.3e-06 55.1 62 46.8
Dinv25477 Davidia involucrata HOM05D000005 ORTHO05D000012 5.3e-06 55.1 62 41.9
Thhalv10027412m.g Eutrema salsugineum HOM05D000005 ORTHO05D018471 5.3e-06 55.1 149 28.2
FAN09G0361 Fragaria x ananassa HOM05D000005 ORTHO05D015660 5.3e-06 55.1 62 46.8
Prupe.5G019000 Prunus persica HOM05D000005 ORTHO05D000012 5.3e-06 55.1 62 46.8
Prupe.8G034600 Prunus persica HOM05D000005 ORTHO05D000012 5.3e-06 55.1 54 48.1
QL07p003457 Quercus lobata HOM05D000005 ORTHO05D000012 5.3e-06 55.1 63 41.3
RcHm_v2.0_Chr1g0349221 Rosa chinensis HOM05D000005 ORTHO05D000012 5.3e-06 55.1 62 48.4
CAN.G1788.3 Capsicum annuum HOM05D000005 ORTHO05D012501 6.9e-06 54.7 62 46.8
Ciclev10023421m.g Citrus clementina HOM05D000005 ORTHO05D000012 6.9e-06 54.7 59 49.2
Gorai.007G321700 Gossypium raimondii HOM05D000005 ORTHO05D000012 6.9e-06 54.7 62 48.4
MD08G1230100 Malus domestica HOM05D003506 ORTHO05D000012 6.9e-06 54.7 153 32.0
RcHm_v2.0_Chr1g0322521 Rosa chinensis HOM05D000005 ORTHO05D001748 6.9e-06 54.7 62 48.4
TPR.G19257 Trifolium pratense HOM05D000005 ORTHO05D000012 6.9e-06 54.7 63 44.4
Atru.chr7.2349 Acer truncatum HOM05D000005 ORTHO05D000012 9.1e-06 54.3 156 31.4
CiPaw.15G173800 Carya illinoinensis HOM05D000005 ORTHO05D000012 9.1e-06 54.3 62 43.5
Ciclev10024485m.g Citrus clementina HOM05D000005 ORTHO05D000012 9.1e-06 54.3 77 42.9
Gohir.A01G064200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.1e-06 54.3 61 44.3
Gorai.007G318700 Gossypium raimondii HOM05D000005 ORTHO05D000012 9.1e-06 54.3 62 43.5
RcHm_v2.0_Chr1g0322431 Rosa chinensis HOM05D000005 ORTHO05D050633 9.1e-06 54.3 79 41.8
Sed0000589 Sechium edule HOM05D000005 ORTHO05D000012 9.1e-06 54.3 62 45.2
Sed0001473 Sechium edule HOM05D000005 ORTHO05D000012 9.1e-06 54.3 62 45.2


User provided reference genes

Program Settings