Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 2.8e-311 1071.2 587 100.0
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.9e-305 1051.2 587 97.6
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 4.9e-276 954.1 588 89.5
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.8e-231 804.7 640 74.1
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 1.0e-228 797.0 617 72.6
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 4.5e-189 665.2 720 59.4
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.7e-175 619.0 443 73.1
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.8e-170 602.8 531 71.0
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 7.0e-97 359.0 582 38.5
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 7.7e-96 355.5 633 35.9
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 6.5e-95 352.4 583 37.7
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 8.8e-92 342.0 581 36.5
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 9.7e-91 338.6 582 36.9
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.0e-88 330.9 581 36.3
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 6.5e-87 325.9 582 37.1
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 2.1e-85 320.9 581 36.7
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.8e-84 317.8 520 37.9
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 8.3e-82 308.9 586 35.7
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 6.5e-79 299.3 583 35.5
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 4.3e-70 270.0 515 35.3
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 5.6e-70 269.6 593 34.2
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.8e-69 267.3 585 32.3
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 2.8e-69 267.3 595 33.1
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 4.0e-68 263.5 608 33.1
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 5.2e-68 263.1 583 32.6
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 2.6e-67 260.8 586 34.0
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.1e-65 255.4 683 30.0
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.1e-65 253.4 686 29.2
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.2e-64 251.9 589 33.1
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.6e-64 251.5 591 37.9
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.7e-63 248.1 426 35.9
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 4.7e-61 240.0 426 34.0
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 1.4e-60 238.4 515 32.4
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 2.3e-60 237.7 600 33.0
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 5.2e-60 236.5 430 35.6
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 4.4e-59 233.4 607 31.1
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 5.8e-59 233.0 433 35.1
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 4.1e-57 226.9 433 33.7
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.6e-56 224.9 611 32.1
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 1.6e-56 224.9 429 34.7
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 2.0e-56 224.6 594 31.5
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 2.0e-56 224.6 429 36.1
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 3.5e-56 223.8 727 27.4
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 6.0e-56 223.0 666 28.5
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 7.8e-56 222.6 585 29.7
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.0e-55 219.9 654 33.0
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.1e-54 218.8 596 32.2
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.9e-54 218.0 674 28.6
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.5e-54 217.6 580 30.9
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 3.3e-54 217.2 717 27.5
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.6e-53 214.9 757 27.5
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 2.8e-53 214.2 640 36.1
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.1e-52 212.2 756 26.6
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 1.1e-52 212.2 749 27.2
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.8e-52 211.5 651 32.4
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.0e-51 208.0 654 32.1
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.4e-51 207.2 655 32.4
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.3e-50 205.3 655 32.4
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 2.2e-50 204.5 599 30.6
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 8.3e-50 202.6 656 31.9
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.1e-49 202.2 587 29.6
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 3.2e-49 200.7 316 41.5
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 4.1e-49 200.3 311 41.5
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 4.1e-49 200.3 426 32.4
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 9.2e-49 199.1 633 29.1
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.2e-48 198.7 607 27.8
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 2.1e-48 198.0 241 44.8
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 2.7e-48 197.6 425 30.6
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 5.1e-47 193.4 424 33.5
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 6.6e-47 193.0 642 35.2
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 1.4e-44 185.3 407 34.6
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.6e-43 181.0 269 40.1
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 7.6e-43 179.5 431 30.2
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 4.9e-42 176.8 585 28.2
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.4e-41 175.3 875 27.7
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 4.1e-41 173.7 431 31.6
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.7e-40 171.0 274 37.2
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 3.5e-40 170.6 248 41.9
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 4.6e-40 170.2 437 33.6
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 4.6e-40 170.2 584 28.3
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.3e-39 168.7 445 29.9
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 2.5e-38 164.5 702 26.6
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 5.6e-38 163.3 390 33.6
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 5.2e-36 156.8 444 30.9
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 3.4e-35 154.1 385 31.9
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 2.2e-34 151.4 690 25.1
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.4e-33 148.7 325 33.8
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 1.9e-33 148.3 690 24.9
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.9e-33 148.3 103 80.6
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 3.2e-33 147.5 417 29.7
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 4.2e-33 147.1 335 32.5
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 4.6e-32 143.7 698 26.1
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.3e-31 142.1 772 24.4
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 2.3e-31 141.4 513 28.3
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 2.3e-31 141.4 226 36.3
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.1e-30 139.0 264 37.9
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.6e-30 136.7 769 23.9
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 7.3e-30 136.3 707 24.8
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.8e-29 134.4 253 37.2
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.6e-29 134.0 228 36.8
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 3.6e-29 134.0 154 44.8
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 1.1e-28 132.5 712 25.0
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 1.4e-28 132.1 357 31.9
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 6.9e-28 129.8 152 45.4
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 9.0e-28 129.4 712 24.7
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 2.0e-27 128.3 685 23.4
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.5e-27 127.1 373 29.0
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 2.9e-26 124.4 701 24.8
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 6.4e-26 123.2 112 50.0
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 1.4e-25 122.1 712 23.9
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.9e-25 121.7 710 23.2
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 2.4e-25 121.3 145 43.4
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 3.5e-24 117.5 710 23.5
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 7.9e-24 116.3 734 23.4
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 7.4e-22 109.8 715 23.8
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 4.8e-21 107.1 286 29.4
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 5.8e-19 100.1 367 26.2
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.3e-18 99.0 373 25.5
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.9e-17 95.1 388 28.1
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 1.2e-16 92.4 283 27.6
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 1.3e-15 89.0 109 46.8
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.3e-14 84.3 429 23.3
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.3e-14 84.3 429 23.3
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 1.3e-10 72.4 108 37.0
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 6.0e-08 63.5 95 37.9
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 7.9e-08 63.2 367 24.3
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.3e-07 62.4 367 24.3
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 2.3e-07 61.6 144 31.9
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 3.0e-07 61.2 201 28.9
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 6.7e-07 60.1 99 35.4


User provided reference genes

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