Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 0.0e+00 1163.7 578 100.0
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 0.0e+00 1149.0 578 98.8
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 0.0e+00 1147.9 578 98.6
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 0.0e+00 1082.8 578 93.1
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 8.7e-310 1066.2 576 91.5
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 4.3e-309 1063.9 572 92.5
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 1.3e-302 1042.3 573 90.4
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 1.5e-269 932.6 564 81.7
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 1.8e-267 925.6 562 80.2
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 2.9e-265 918.3 577 78.5
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 1.2e-263 912.9 564 79.6
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 1.0e-262 909.8 567 80.2
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 1.5e-261 906.0 576 79.2
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 5.4e-259 897.5 565 78.6
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 9.1e-259 896.7 560 78.6
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 1.2e-258 896.3 564 78.5
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 2.2e-257 892.1 571 78.8
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.1e-256 889.8 576 76.6
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 6.1e-255 884.0 565 77.3
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 6.1e-255 884.0 563 77.3
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 8.0e-255 883.6 565 77.0
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 1.0e-254 883.2 565 77.5
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 1.4e-254 882.9 565 77.7
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.8e-254 882.5 565 78.2
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.8e-254 882.5 565 78.2
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 2.3e-254 882.1 574 76.5
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 3.0e-254 881.7 578 75.6
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 2.6e-253 878.6 564 78.2
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 4.4e-253 877.9 563 76.6
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.7e-253 877.5 564 77.8
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 7.5e-253 877.1 565 77.9
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 2.2e-252 875.5 560 77.9
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 2.8e-252 875.2 563 76.7
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 6.3e-252 874.0 565 76.3
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.1e-251 873.2 561 75.9
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.8e-249 864.8 562 77.4
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.9e-248 862.4 565 76.3
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 1.9e-248 862.4 564 74.1
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 2.5e-248 862.1 565 76.5
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 2.5e-248 862.1 565 76.5
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.6e-247 859.4 563 75.0
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 2.1e-247 859.0 561 75.4
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 5.2e-246 854.4 563 74.8
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.3e-244 849.7 565 75.4
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 4.1e-243 844.7 566 75.3
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 5.4e-243 844.3 571 72.3
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 1.2e-242 843.2 562 73.0
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 1.6e-242 842.8 563 75.8
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 2.0e-242 842.4 576 74.5
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 3.5e-242 841.6 574 72.1
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.7e-241 839.3 566 74.6
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 8.6e-241 837.0 564 73.4
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 1.1e-240 836.6 567 74.1
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 1.5e-240 836.3 588 72.6
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 1.9e-240 835.9 564 72.9
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 4.3e-240 834.7 562 75.1
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 4.7e-239 831.2 563 72.6
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 8.9e-238 827.0 550 74.2
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 4.4e-237 824.7 564 71.5
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 9.8e-237 823.5 566 72.4
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 2.2e-236 822.4 564 71.5
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 3.7e-236 821.6 565 72.2
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 4.9e-236 821.2 619 67.5
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 1.4e-235 819.7 567 71.4
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 2.4e-235 818.9 556 73.4
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 3.5e-234 815.1 595 70.3
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 1.0e-233 813.5 562 71.5
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 3.0e-233 812.0 551 74.8
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 5.0e-233 811.2 593 68.6
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 6.6e-233 810.8 562 71.5
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 4.3e-232 808.1 576 71.9
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.2e-231 806.6 563 71.2
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 2.8e-231 805.4 566 71.2
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 3.6e-231 805.1 563 71.2
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 8.1e-231 803.9 564 71.3
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.1e-230 803.5 564 73.4
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 2.3e-230 802.4 563 71.0
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 4.0e-230 801.6 566 70.8
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 7.8e-218 760.8 562 69.4
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.0e-217 760.4 457 81.4
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 3.2e-211 738.8 574 66.6
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 1.6e-210 736.5 458 78.2
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 2.1e-207 726.1 571 65.0
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 4.0e-206 721.8 635 61.1
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 2.4e-195 686.0 455 73.6
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 2.7e-194 682.6 419 80.9
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 2.9e-188 662.5 399 80.7
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 2.3e-185 652.9 643 54.7
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 1.4e-182 643.7 404 78.0
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 4.1e-182 642.1 415 75.9
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 2.6e-181 639.4 621 54.8
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 2.6e-181 639.4 621 54.8
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 4.6e-178 628.6 417 74.8
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.6e-170 603.6 421 72.0
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 6.1e-170 601.7 414 73.2
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 9.1e-166 587.8 394 74.9
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.3e-164 583.9 428 68.7
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 4.2e-155 552.4 549 53.6
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 6.1e-154 548.5 564 54.3
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 5.5e-147 525.4 304 83.6
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 5.7e-136 488.8 299 80.3
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 8.9e-129 464.9 313 72.5
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.2e-125 454.5 555 46.3
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 3.2e-118 429.9 656 39.6
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 4.0e-113 412.9 240 84.6
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 3.4e-88 330.1 198 81.3
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 6.9e-81 305.8 565 36.6
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 2.3e-76 290.8 172 84.3
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.3e-66 258.5 411 38.4
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 9.7e-59 232.3 136 80.1
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.8e-57 228.0 132 78.8
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 5.3e-57 226.5 146 73.3
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 4.5e-56 223.4 130 80.0
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 7.2e-46 189.5 102 88.2
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 9.4e-46 189.1 154 64.9
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 9.4e-38 162.5 104 77.9
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.9e-30 138.3 172 47.1
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 2.8e-26 124.4 66 84.8
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.8e-17 95.1 54 77.8
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 1.6e-13 82.0 442 22.9
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 7.0e-09 66.6 148 31.8
Os08g0522700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.0e-07 60.5 165 27.9
Os11g0619800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.5e-06 58.2 146 30.1
Os08g0523000 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.3e-06 57.4 177 24.9
Medtr7g094900 Medicago truncatula HOM05D002203 ORTHO05D002647 9.5e-06 56.2 162 28.4
Medtr7g094910 Medicago truncatula HOM05D002203 ORTHO05D002647 9.5e-06 56.2 162 28.4


User provided reference genes

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