Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 0.0e+00 1340.1 697 100.0
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 0.0e+00 1332.4 697 99.3
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 0.0e+00 1316.6 697 98.0
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 0.0e+00 1139.8 660 90.6
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 1.1e-301 1039.6 678 82.2
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.5e-287 992.6 685 77.4
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 2.1e-286 988.8 685 76.5
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 3.0e-224 782.3 689 60.7
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 2.0e-223 779.6 680 60.9
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 7.2e-218 761.1 601 64.9
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 1.4e-216 756.9 671 60.8
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 2.8e-214 749.2 695 57.7
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 8.5e-211 737.6 644 61.2
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 5.5e-210 734.9 676 57.8
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 2.0e-207 726.5 664 59.0
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 2.0e-207 726.5 678 58.3
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 9.8e-207 724.2 682 58.1
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.7e-206 723.4 670 57.9
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 8.3e-206 721.1 680 57.1
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.4e-205 719.5 679 58.0
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 5.9e-204 714.9 682 57.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 1.7e-203 713.4 659 58.3
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 1.7e-203 713.4 675 56.7
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 2.3e-203 713.0 657 59.5
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.8e-203 712.2 679 56.1
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.5e-202 709.5 648 57.6
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 3.3e-202 709.1 689 56.7
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 3.6e-201 705.7 678 57.1
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 8.0e-201 704.5 666 56.5
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.2e-199 700.7 678 56.0
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.2e-199 700.7 682 56.6
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 3.4e-199 699.1 653 58.0
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 7.5e-199 698.0 691 55.4
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 4.9e-198 695.3 700 54.9
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 1.8e-197 693.3 675 54.5
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 7.0e-197 691.4 670 54.9
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 1.6e-196 690.3 670 55.2
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.7e-195 686.8 684 55.3
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 6.6e-195 684.9 674 55.6
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 4.3e-194 682.2 681 53.2
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 1.6e-193 680.2 685 55.6
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.6e-193 680.2 679 55.8
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.8e-193 679.5 679 56.1
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 8.0e-193 677.9 682 53.2
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 1.4e-192 677.2 693 54.0
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.8e-192 676.8 683 53.3
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 3.1e-192 676.0 656 56.1
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 5.2e-192 675.2 663 54.4
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.5e-191 673.7 679 51.8
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 7.5e-191 671.4 601 59.2
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.8e-191 671.0 618 58.4
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.7e-190 670.2 671 56.0
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.9e-190 669.5 672 55.8
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 6.4e-190 668.3 778 50.3
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.2e-189 666.0 650 56.0
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 7.0e-189 664.8 680 54.4
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 7.0e-189 664.8 667 53.7
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.6e-188 663.7 682 54.1
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.7e-188 662.9 682 54.0
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.0e-188 661.8 645 54.3
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.3e-187 660.6 667 54.4
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 3.0e-187 659.4 684 53.2
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 3.9e-187 659.1 664 55.0
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.0e-187 658.7 682 54.7
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.3e-186 656.0 671 55.7
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 9.5e-186 654.4 751 50.2
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.2e-185 654.1 651 54.2
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 2.8e-185 652.9 669 52.9
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 4.7e-185 652.1 679 52.0
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.3e-184 649.8 713 53.0
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 2.3e-184 649.8 719 52.6
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 3.1e-184 649.4 713 52.6
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 3.4e-183 646.0 610 56.6
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 4.4e-183 645.6 699 49.6
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.3e-182 644.0 671 52.5
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.3e-182 644.0 684 52.0
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 1.7e-182 643.7 693 50.6
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 3.7e-182 642.5 670 54.6
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.4e-182 641.7 683 52.9
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.2e-181 639.4 729 50.5
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 9.2e-181 637.9 619 54.1
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 9.2e-181 637.9 679 54.1
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-180 637.5 699 49.2
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.0e-180 635.2 725 50.3
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 5.1e-179 632.1 644 56.5
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 5.1e-179 632.1 703 49.1
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 2.5e-178 629.8 704 49.4
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.5e-178 629.8 730 50.5
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 2.5e-178 629.8 647 52.7
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.3e-178 629.0 648 55.7
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 4.3e-178 629.0 661 53.6
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 2.8e-177 626.3 587 59.3
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 6.2e-177 625.2 667 53.2
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.4e-176 624.0 684 51.6
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 1.5e-175 620.5 732 50.5
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 4.4e-175 619.0 671 51.1
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 9.9e-175 617.8 657 50.7
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 9.9e-175 617.8 646 52.6
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 1.7e-174 617.1 674 50.9
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.7e-174 617.1 582 57.9
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 2.2e-174 616.7 677 50.7
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 3.8e-174 615.9 620 54.4
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 6.4e-174 615.1 672 51.0
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 4.1e-173 612.5 703 48.5
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 3.6e-169 599.4 649 50.8
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 6.9e-168 595.1 650 51.4
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.5e-167 594.0 695 47.6
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.5e-167 594.0 664 50.2
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 2.6e-167 593.2 540 58.9
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 6.4e-166 588.6 698 47.9
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 4.2e-165 585.9 680 48.8
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 5.4e-165 585.5 656 49.7
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 2.1e-161 573.5 685 49.5
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 4.2e-157 559.3 667 49.6
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 5.4e-157 558.9 718 47.2
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.2e-156 557.8 677 47.7
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 6.0e-156 555.4 670 48.1
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.3e-155 554.3 649 47.3
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 6.7e-155 552.0 636 50.5
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 3.1e-152 543.1 662 47.3
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 4.0e-152 542.7 662 47.3
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 7.6e-151 538.5 645 47.6
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 1.1e-149 534.6 715 46.4
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.4e-149 534.3 669 46.8
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.4e-149 533.5 609 50.7
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 7.4e-146 521.9 676 46.9
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.8e-144 517.3 459 60.6
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 1.9e-141 507.3 657 45.8
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.9e-141 507.3 679 45.1
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 5.1e-139 499.2 480 55.8
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.8e-129 466.8 492 52.8
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.4e-123 448.0 500 52.4
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 5.5e-117 426.0 653 42.0
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 1.2e-116 424.9 751 37.8
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.8e-112 411.0 666 40.7
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 8.0e-108 395.6 414 53.4
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 2.2e-105 387.5 497 45.3
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.2e-105 387.5 653 38.4
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 6.5e-102 375.9 673 37.1
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-101 375.2 645 38.9
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 3.2e-101 373.6 681 37.2
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 4.2e-101 373.2 643 37.8
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.2e-95 355.1 395 50.9
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 4.2e-93 346.7 764 34.3
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.6e-92 344.7 750 34.5
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.7e-90 336.3 681 36.3
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.0e-87 327.8 633 36.0
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 8.6e-86 322.4 818 32.0
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 6.8e-83 312.8 709 32.6
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 2.2e-81 307.8 659 36.1
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 3.7e-81 307.0 499 38.9
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 6.8e-75 286.2 218 66.1
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 5.8e-74 283.1 557 36.1
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.9e-73 280.8 214 65.9
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 6.4e-73 279.6 630 34.0
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.4e-72 278.5 297 53.5
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.6e-71 275.0 516 37.0
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.1e-68 262.7 519 34.9
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 3.7e-65 253.8 384 40.4
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.7e-49 201.8 338 36.7
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.9e-32 145.2 251 37.5
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.3e-32 142.9 109 65.1
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 1.8e-27 128.6 183 39.3
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-21 109.4 109 55.0
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 8.2e-20 103.2 66 75.8
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 1.3e-17 95.9 63 71.4
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.4e-16 89.7 118 44.9
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 8.8e-14 83.2 52 71.2
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 9.7e-13 79.7 175 35.4
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 3.7e-12 77.8 153 35.9
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.3e-09 69.3 54 53.7
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 1.4e-06 59.3 48 58.3


User provided reference genes

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