Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 4.7e-291 1003.8 511 100.0
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 2.4e-287 991.5 511 99.0
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 3.6e-283 977.6 511 97.3
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 3.1e-258 894.8 513 91.0
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.0e-253 878.2 517 88.4
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 6.4e-248 860.5 520 86.5
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 1.3e-245 852.8 512 86.3
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 2.0e-204 716.1 516 74.2
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 9.1e-202 707.2 514 72.8
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.2e-201 706.8 518 72.8
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.5e-201 706.4 515 72.8
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 7.7e-201 704.1 518 72.2
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 1.0e-200 703.7 518 72.4
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.9e-199 699.5 511 73.0
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 3.2e-199 698.7 540 70.9
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 2.1e-198 696.0 515 73.2
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 6.1e-198 694.5 510 73.5
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 5.2e-197 691.4 516 71.9
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.1e-196 690.3 517 71.8
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 2.0e-196 689.5 510 72.2
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 2.6e-196 689.1 518 71.4
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 2.6e-196 689.1 512 72.3
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 2.4e-194 682.6 519 71.1
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 5.3e-194 681.4 513 71.5
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 2.0e-193 679.5 517 70.0
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.0e-193 679.5 518 71.6
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 2.6e-193 679.1 520 70.8
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.3e-192 676.8 519 70.5
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.7e-192 676.4 512 71.3
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 3.8e-192 675.2 518 70.3
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 1.5e-191 673.3 509 70.5
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.9e-191 672.9 511 70.1
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 2.7e-190 669.1 523 69.2
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 4.7e-190 668.3 528 69.9
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.4e-189 666.8 514 69.3
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.8e-189 666.4 527 68.7
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.8e-189 666.4 523 67.7
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 5.2e-189 664.8 516 70.0
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 5.2e-189 664.8 520 67.9
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 5.2e-189 664.8 524 69.5
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 8.8e-189 664.1 516 68.0
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 1.5e-188 663.3 520 68.5
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 2.0e-188 662.9 517 69.8
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 2.2e-187 659.4 531 68.0
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 8.2e-187 657.5 514 70.2
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 8.2e-187 657.5 527 69.6
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 2.4e-186 656.0 527 66.2
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 3.1e-186 655.6 516 71.5
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 1.2e-185 653.7 518 68.5
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 5.9e-185 651.4 521 67.0
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 7.7e-185 651.0 518 69.1
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 6.5e-184 647.9 528 65.9
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 8.5e-184 647.5 515 70.3
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 2.1e-182 642.9 512 70.1
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.8e-181 639.8 467 71.5
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 6.8e-181 637.9 522 66.5
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 6.8e-181 637.9 523 66.2
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.2e-180 637.1 513 69.2
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.6e-180 636.0 517 66.9
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.3e-179 633.6 515 68.0
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 2.2e-179 632.9 518 66.8
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 6.3e-179 631.3 517 67.7
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 2.4e-178 629.4 528 66.1
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 4.1e-178 628.6 514 64.6
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 7.0e-178 627.9 528 65.5
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 1.6e-177 626.7 518 66.8
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 1.6e-177 626.7 517 67.5
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 4.5e-177 625.2 527 65.5
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 3.8e-176 622.1 517 66.5
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 6.5e-176 621.3 523 66.0
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.1e-175 620.5 507 66.5
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 1.5e-175 620.2 517 67.3
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 4.2e-175 618.6 516 66.3
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 5.5e-175 618.2 507 66.5
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 1.2e-174 617.1 507 66.5
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 3.6e-174 615.5 520 65.8
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 6.1e-174 614.8 510 66.7
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 1.4e-173 613.6 518 66.2
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.8e-173 613.2 525 65.9
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.8e-173 613.2 522 66.1
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.2e-172 610.5 512 65.8
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 2.2e-171 606.3 506 64.8
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.7e-171 605.5 515 65.6
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 5.4e-170 601.7 516 64.7
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.0e-170 601.3 516 64.9
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 1.6e-169 600.1 515 66.6
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.5e-169 599.0 516 64.7
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.0e-168 597.4 527 64.1
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 3.3e-167 592.4 514 64.4
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 8.0e-166 587.8 494 64.0
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 3.4e-164 582.4 535 61.7
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 4.4e-164 582.0 509 64.6
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 4.4e-164 582.0 465 66.9
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 1.7e-163 580.1 507 63.5
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 3.7e-163 578.9 510 63.9
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.1e-162 577.4 512 63.3
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 7.0e-162 574.7 462 68.2
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 1.6e-161 573.5 535 60.4
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 2.3e-160 569.7 515 64.9
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 1.9e-159 566.6 507 62.5
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 3.1e-157 559.3 507 61.9
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 5.2e-157 558.5 509 61.5
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 6.8e-157 558.1 507 62.5
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 8.9e-157 557.8 507 62.5
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 1.3e-144 517.3 525 56.6
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 4.6e-137 492.3 523 56.0
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 5.1e-136 488.8 523 56.0
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.1e-135 487.6 533 53.3
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 4.3e-135 485.7 521 55.7
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 1.4e-130 470.7 485 56.9
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 4.8e-126 455.7 516 53.7
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 1.3e-123 447.6 527 52.4
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 7.9e-121 438.3 531 51.4
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 4.3e-119 432.6 512 52.5
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 6.2e-118 428.7 307 70.4
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.0e-112 411.4 516 48.8
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.3e-104 384.4 508 50.2
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 9.1e-93 345.1 574 42.0
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.1e-90 338.2 293 64.8
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 3.0e-64 250.4 286 51.0
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 2.3e-56 224.2 341 42.8
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 1.4e-48 198.4 201 59.2
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 1.7e-35 154.8 281 39.1
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 6.2e-25 119.8 483 27.5
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 8.1e-25 119.4 520 27.3
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 4.9e-22 110.2 100 65.0
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.6e-20 105.1 60 81.7
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 2.3e-19 101.3 73 69.9
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.9e-19 100.5 86 61.6
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.4e-13 80.1 66 62.1
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 9.3e-13 79.3 182 33.5
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.0e-11 75.9 54 63.0
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.6e-10 70.1 81 53.1


User provided reference genes

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