Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g047820.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 2.7e-124 450.7 914 100.0
Sopen07g024250 Solanum pennellii HOM05D003210 ORTHO05D000001 2.7e-119 434.1 914 98.9
CAN.G1397.6 Capsicum annuum HOM05D003210 ORTHO05D000001 2.9e-89 334.3 202 80.2
Nitab4.5_0011940g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.9e-77 295.0 203 72.4
Peaxi162Scf00776g00227 Petunia axillaris HOM05D003210 ORTHO05D000001 1.2e-71 275.8 191 69.6
PGSC0003DMG400006128 Solanum tuberosum HOM05D003210 ORTHO05D000001 1.3e-54 219.2 208 94.2
MSTRG.6643 Avicennia marina HOM05D003210 ORTHO05D000001 8.4e-49 199.9 203 53.2
Hma1.2p1_0133F.1_g061410 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 1.9e-48 198.7 205 52.2
MD09G1122300 Malus domestica HOM05D003210 ORTHO05D000001 2.4e-48 198.4 175 55.4
Hma1.2p1_1825F.1_g304380 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 3.2e-48 198.0 205 52.2
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.5e-47 194.5 148 61.5
Oeu040467.2 Olea europaea HOM05D003210 ORTHO05D000001 7.9e-47 193.4 174 55.7
SalBow7G0399 Salvia bowleyana HOM05D003210 ORTHO05D000001 7.9e-47 193.4 203 50.2
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 1.0e-46 193.0 148 61.5
vmacro12101 Vaccinium macrocarpon HOM05D003210 ORTHO05D000001 3.0e-46 191.4 208 51.0
GSVIVG01030055001 Vitis vinifera HOM05D003210 ORTHO05D000001 3.0e-46 191.4 204 50.5
Nn1g03235 Nelumbo nucifera HOM05D003210 ORTHO05D000001 6.7e-46 190.3 204 51.5
Manes.12G061200 Manihot esculenta HOM05D003210 ORTHO05D000001 8.7e-46 189.9 168 54.8
Nitab4.5_0000441g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.5e-45 189.1 208 87.5
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 2.5e-45 188.3 205 51.7
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 4.3e-45 187.6 201 51.2
RcHm_v2.0_Chr2g0156641 Rosa chinensis HOM05D003210 ORTHO05D000001 5.6e-45 187.2 210 48.6
Haze_07989 Corylus avellana HOM05D003210 ORTHO05D000001 1.6e-44 185.7 179 51.4
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.6e-44 185.7 206 51.0
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 2.1e-44 185.3 147 61.2
Atru.chr6.3361 Acer truncatum HOM05D003210 ORTHO05D000001 4.8e-44 184.1 201 47.3
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 4.8e-44 184.1 205 50.2
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 6.2e-44 183.7 174 55.2
Cfa012658 Carpinus fangiana HOM05D003210 ORTHO05D000001 8.2e-44 183.3 171 53.2
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 3.1e-43 181.4 148 58.8
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 4.0e-43 181.0 200 51.0
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 6.9e-43 180.3 149 59.1
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 6.9e-43 180.3 150 58.0
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 1.5e-42 179.1 149 58.4
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.0e-41 176.4 149 58.4
Eucgr.K00651 Eucalyptus grandis HOM05D003210 ORTHO05D000001 1.7e-41 175.6 146 56.8
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 2.2e-41 175.3 148 55.4
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 2.9e-41 174.9 150 56.0
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 8.4e-41 173.3 150 56.7
HanXRQChr03g0075201 Helianthus annuus HOM05D003210 ORTHO05D000001 1.4e-40 172.6 204 45.1
unitig_748.g8367 Utricularia gibba HOM05D003210 ORTHO05D000001 1.9e-40 172.2 149 53.0
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 6.0e-39 167.2 198 47.0
FAN05G1838 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.0e-39 167.2 115 65.2
TWI18G1117 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 6.7e-38 163.7 175 47.4
FAN02G2842 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.5e-37 161.8 113 63.7
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.8e-36 158.3 115 61.7
PGR142G4479 Punica granatum HOM05D003210 ORTHO05D000001 9.0e-35 153.3 147 51.0
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 3.4e-34 151.4 205 43.9
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 5.9e-34 150.6 206 74.8
PSO675G6229 Papaver somniferum HOM05D003210 ORTHO05D000001 1.4e-32 146.0 150 50.7
MBI19_g25583_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 5.5e-32 144.1 205 42.0
AUR62017491 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.9e-30 137.9 185 41.6
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 6.7e-30 137.1 150 48.7
AUR62015034 Chenopodium quinoa HOM05D003210 ORTHO05D000001 2.5e-29 135.2 150 46.7
QL04p021900 Quercus lobata HOM05D003210 ORTHO05D000001 8.2e-28 130.2 206 71.4
Cc04_g11530 Coffea canephora HOM05D003210 ORTHO05D000001 4.5e-26 124.4 205 67.3
Hma1.2p1_0133F.1_g061420 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 2.3e-22 112.1 80 62.5
Ah.15g091280 Amaranthus hybridus HOM05D003210 ORTHO05D000001 3.9e-22 111.3 107 51.4
ATR0712G112 Amborella trichopoda HOM05D003210 ORTHO05D000001 5.1e-22 110.9 169 38.5
HPP92_009567 Vanilla planifolia HOM05D003210 ORTHO05D000001 5.1e-22 110.9 147 40.8
COL.COLO4_08492 Corchorus olitorius HOM05D003210 ORTHO05D000001 3.3e-21 108.2 85 61.2
MELO3C013188.2 Cucumis melo HOM05D003210 ORTHO05D000001 4.4e-21 107.8 149 38.9
Migut.M00034 Erythranthe guttata HOM05D003210 ORTHO05D000001 2.8e-20 105.1 192 67.7
DCAR_012908 Daucus carota HOM05D003210 ORTHO05D000001 3.1e-19 101.7 80 58.8
DCAR_012925 Daucus carota HOM05D003210 ORTHO05D000001 3.1e-19 101.7 80 58.8
ATR0665G178 Amborella trichopoda HOM05D003210 ORTHO05D000001 1.5e-18 99.4 134 36.6
Dinv33235 Davidia involucrata HOM05D003210 ORTHO05D000001 2.0e-18 99.0 206 65.0
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 2.6e-18 98.6 56 76.8
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 3.4e-18 98.2 135 36.3
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 4.5e-18 97.8 166 33.7
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 7.7e-18 97.1 181 32.0
Lsat_1_v5_gn_9_104601 Lactuca sativa HOM05D003210 ORTHO05D000001 2.5e-16 92.0 75 56.0
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 3.2e-16 91.7 175 31.4
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 4.2e-16 91.3 149 32.9
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 4.2e-16 91.3 147 34.0
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 5.5e-16 90.9 175 31.4
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 5.5e-16 90.9 207 28.0
SEGI_11288 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 7.2e-16 90.5 152 30.9
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 9.4e-16 90.1 150 30.0
SEGI_31076 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 1.2e-15 89.7 141 36.2
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 1.6e-15 89.4 156 32.7
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 1.6e-15 89.4 149 32.2
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 1.6e-15 89.4 149 32.2
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 2.7e-15 88.6 152 35.5
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 4.7e-15 87.8 151 32.5
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 6.1e-15 87.4 148 31.8
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 7.9e-15 87.0 148 34.5
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.0e-14 86.7 171 33.3
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.4e-14 86.3 148 33.8
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 2.3e-14 85.5 147 32.0
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 3.0e-14 85.1 150 26.7
CDE02G4398 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 3.0e-14 85.1 149 28.9
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 3.9e-14 84.7 151 29.1
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 1.1e-13 83.2 148 31.1
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 1.5e-13 82.8 148 29.7
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 1.5e-13 82.8 165 32.1
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 2.0e-13 82.4 152 30.9
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 2.6e-13 82.0 154 31.2
ATR0661G545 Amborella trichopoda HOM05D008810 ORTHO05D010971 3.3e-13 81.6 193 26.9
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 3.3e-13 81.6 149 34.2
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 3.3e-13 81.6 172 30.2
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 4.4e-13 81.3 153 30.7
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 9.7e-13 80.1 147 31.3
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 3.7e-12 78.2 147 29.9
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 3.7e-12 78.2 138 29.7
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 3.7e-12 78.2 152 31.6
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 4.8e-12 77.8 153 29.4
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 6.3e-12 77.4 191 26.2
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 8.2e-12 77.0 159 28.9
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.4e-11 76.3 188 28.2
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 2.4e-11 75.5 164 29.9
Lj1P792T34 Lonicera japonica HOM05D003210 ORTHO05D000001 3.1e-11 75.1 115 44.3
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 4.1e-11 74.7 152 30.3
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 4.1e-11 74.7 187 27.3
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 5.3e-11 74.3 149 28.2
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 1.2e-10 73.2 181 28.2
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 1.2e-10 73.2 179 26.8
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 1.2e-10 73.2 169 27.8
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 1.2e-10 73.2 164 27.4
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 1.6e-10 72.8 149 28.2
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 1.6e-10 72.8 169 27.2
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 2.6e-10 72.0 181 28.2
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 2.6e-10 72.0 152 32.2
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 3.5e-10 71.6 147 29.9
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 3.5e-10 71.6 150 30.0
Thecc.01G216300 Theobroma cacao HOM05D008810 ORTHO05D010971 4.5e-10 71.2 146 29.5
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 5.9e-10 70.9 155 31.0
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 5.9e-10 70.9 154 27.3
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 7.7e-10 70.5 185 27.0
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 1.0e-09 70.1 175 28.6
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 1.7e-09 69.3 147 28.6
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.7e-09 69.3 151 29.8
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 2.2e-09 68.9 186 24.7
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 2.2e-09 68.9 206 28.6
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 2.2e-09 68.9 149 27.5
Ciclev10018778m.g Citrus clementina HOM05D008810 ORTHO05D010971 2.9e-09 68.6 149 32.2
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 2.9e-09 68.6 152 27.6
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 3.8e-09 68.2 150 26.7
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 3.8e-09 68.2 150 26.7
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 3.8e-09 68.2 150 26.7
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 3.8e-09 68.2 179 25.1
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 6.5e-09 67.4 155 26.5
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 8.5e-09 67.0 146 28.8
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 1.1e-08 66.6 144 27.8
ECA240G1833 Erigeron canadensis HOM05D003210 ORTHO05D000001 1.5e-08 66.2 51 56.9
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.5e-08 66.2 151 30.5
HanXRQChr13g0389381 Helianthus annuus HOM05D003210 ORTHO05D000001 1.5e-08 66.2 58 50.0
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 3.2e-08 65.1 151 26.5
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 4.2e-08 64.7 156 25.6
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 7.2e-08 63.9 147 25.2
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 7.2e-08 63.9 153 24.8
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 7.2e-08 63.9 145 26.9
Ah.03g139830 Amaranthus hybridus HOM05D003210 ORTHO05D000001 9.4e-08 63.5 156 28.8
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 1.2e-07 63.2 148 28.4
MBI11_g07406_MAGBIO Magnolia biondii HOM05D008810 ORTHO05D010971 1.2e-07 63.2 166 25.3
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 1.6e-07 62.8 147 25.2
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.7e-07 62.0 148 27.7
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 2.7e-07 62.0 150 26.7
GSVIVG01005921001 Vitis vinifera HOM05D008810 ORTHO05D010971 2.7e-07 62.0 195 28.7
HanXRQChr08g0232341 Helianthus annuus HOM05D008810 ORTHO05D010971 3.6e-07 61.6 152 25.7
HanXRQChr13g0389361 Helianthus annuus HOM05D000003 ORTHO05D000007 6.1e-07 60.8 57 45.6
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 1.0e-06 60.1 168 23.2
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 1.4e-06 59.7 149 26.8
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.4e-06 59.7 149 26.8
CDE02G0711 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 4.0e-06 58.2 203 59.1
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 5.2e-06 57.8 147 25.9
THA.LOC104802656 Tarenaya hassleriana HOM05D008810 ORTHO05D010971 8.8e-06 57.0 148 27.0
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 8.8e-06 57.0 172 25.0


User provided reference genes

Program Settings