Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.3e-125 451.8 246 100.0
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.0e-121 440.3 246 97.6
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.3e-118 429.9 253 93.7
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 7.9e-111 404.1 250 88.8
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.0e-105 387.1 236 87.7
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.5e-98 361.7 248 78.6
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 7.7e-98 360.9 234 81.6
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.0e-89 334.0 232 77.2
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 6.1e-87 324.7 232 74.6
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.0e-86 323.9 232 72.8
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.8e-86 323.2 227 79.3
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.7e-86 321.2 232 72.4
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.7e-86 321.2 232 72.8
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 8.8e-86 320.9 232 72.4
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.5e-85 320.1 232 71.6
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 3.3e-85 318.9 233 74.2
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.2e-84 316.2 232 70.3
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 6.3e-84 314.7 237 70.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.4e-83 313.5 233 69.5
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.8e-83 313.2 231 71.4
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.4e-83 312.8 231 71.4
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 2.4e-83 312.8 234 70.5
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 3.1e-83 312.4 234 70.5
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 4.1e-83 312.0 235 67.7
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 7.0e-83 311.2 232 71.1
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.1e-83 310.8 232 71.1
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 9.1e-83 310.8 235 71.1
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 2.0e-82 309.7 232 69.4
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 4.5e-82 308.5 234 69.2
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.5e-82 308.5 232 66.4
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.7e-81 306.6 230 66.5
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.8e-81 305.4 230 66.1
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 6.5e-81 304.7 232 68.5
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.9e-80 303.1 229 69.0
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.9e-80 303.1 238 66.4
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.5e-80 302.8 232 65.5
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.2e-79 300.4 230 68.3
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 6.1e-79 298.1 232 65.5
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.0e-78 297.4 231 70.1
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.0e-78 297.4 232 67.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.4e-78 297.0 232 65.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.3e-78 296.2 232 67.2
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.0e-78 295.8 232 66.4
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.6e-77 292.7 232 64.7
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 2.6e-77 292.7 228 66.2
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 9.8e-77 290.8 231 66.2
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.3e-76 290.4 232 66.4
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 2.2e-76 289.7 231 65.8
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.1e-75 287.3 230 64.3
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 7.0e-75 284.6 232 63.4
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.6e-74 283.5 229 65.9
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.6e-74 283.5 229 66.4
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.6e-74 283.5 232 65.9
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 2.7e-74 282.7 230 64.3
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.5e-74 282.3 216 69.0
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 4.5e-74 282.0 232 61.6
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 4.5e-74 282.0 228 64.0
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 5.9e-74 281.6 258 62.4
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 7.7e-74 281.2 240 60.0
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 7.7e-74 281.2 231 62.8
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.0e-73 280.8 232 62.1
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.0e-73 280.8 232 62.1
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.0e-73 280.8 235 66.0
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.2e-73 279.6 232 61.6
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 2.9e-73 279.3 232 61.6
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 2.9e-73 279.3 240 60.0
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.9e-73 279.3 232 65.1
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.9e-73 279.3 229 63.8
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 3.8e-73 278.9 234 65.4
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 3.8e-73 278.9 235 63.4
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 5.0e-73 278.5 232 61.2
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 5.0e-73 278.5 274 58.8
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 6.5e-73 278.1 225 64.0
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.1e-72 277.3 232 60.8
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.1e-72 277.3 235 61.3
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.1e-72 277.3 235 61.3
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.5e-72 276.9 231 61.0
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.5e-72 276.9 232 64.7
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.5e-72 276.2 232 61.2
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 3.2e-72 275.8 230 63.5
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 5.5e-72 275.0 231 62.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 1.2e-71 273.9 232 61.2
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.2e-71 273.9 234 61.1
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.6e-71 273.5 230 60.4
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.6e-71 272.3 229 62.9
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 4.7e-71 271.9 230 62.2
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 4.7e-71 271.9 232 61.2
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 6.1e-71 271.6 229 63.8
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 6.1e-71 271.6 232 63.4
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.8e-70 270.0 235 59.1
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 4.0e-70 268.9 232 62.9
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 5.2e-70 268.5 230 61.7
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 8.8e-70 267.7 235 59.6
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.5e-69 266.9 230 59.6
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.5e-69 266.9 232 60.8
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 3.4e-69 265.8 232 58.6
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 7.5e-69 264.6 235 58.3
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.7e-68 263.5 235 58.7
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 2.2e-68 263.1 229 61.6
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.9e-68 261.9 229 60.3
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 6.3e-68 261.5 232 62.5
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.4e-67 260.4 232 61.2
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 3.1e-67 259.2 163 80.4
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 3.1e-67 259.2 232 61.6
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 4.1e-67 258.8 240 56.2
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 5.4e-67 258.5 230 61.7
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 2.7e-66 256.1 189 66.1
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.3e-65 253.8 232 61.6
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 6.6e-65 251.5 231 60.6
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.6e-63 245.7 251 61.8
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.0e-62 244.2 226 60.6
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 1.0e-62 244.2 231 56.3
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.8e-62 243.4 234 54.3
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 7.0e-59 231.5 180 71.1
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 3.5e-58 229.2 161 72.7
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 5.9e-58 228.4 163 68.7
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 8.6e-57 224.6 236 53.8
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 9.5e-56 221.1 178 66.3
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.2e-55 220.7 247 50.6
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.6e-55 220.3 238 54.6
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 3.6e-55 219.2 248 49.2
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.2e-53 214.2 159 69.8
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.2e-53 214.2 141 78.7
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 4.9e-52 208.8 181 64.1
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 5.4e-51 205.3 145 70.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 7.0e-51 204.9 234 51.3
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 9.2e-51 204.5 154 66.9
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.4e-46 190.7 191 56.0
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 5.2e-46 188.7 174 55.7
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 4.4e-45 185.7 233 48.5
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 5.6e-40 168.7 232 48.3
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 6.2e-39 165.2 126 72.2
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.1e-38 164.5 193 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.8e-38 163.7 187 47.6
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.8e-38 161.8 141 63.8
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 2.0e-37 160.2 130 69.2
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 7.6e-37 158.3 229 41.9
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 9.9e-37 157.9 116 69.0
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 3.8e-36 156.0 115 67.8
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 4.9e-36 155.6 228 39.9
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.1e-34 150.2 152 55.9
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 2.7e-34 149.8 148 61.5
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.3e-33 147.5 115 66.1
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.3e-33 147.5 229 37.1
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 4.7e-31 139.0 177 46.3
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 3.1e-30 136.3 236 36.0
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.9e-28 129.0 90 74.4
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 3.9e-25 119.4 235 35.7
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 5.1e-25 119.0 181 40.9
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.3e-24 115.9 180 43.9
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.6e-23 112.8 108 65.7
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 8.1e-23 111.7 186 40.9
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 2.0e-21 107.1 148 42.6
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 3.2e-19 99.8 134 47.0
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 5.4e-19 99.0 119 44.5
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 9.3e-19 98.2 70 70.0
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.7e-18 96.7 83 66.3
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.6e-18 95.9 89 62.9
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.6e-18 95.9 89 62.9
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.0e-18 95.5 90 57.8
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.3e-17 94.4 58 72.4
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 4.3e-16 89.4 104 46.2
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.8e-15 86.7 75 60.0
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.1e-14 84.7 53 75.5
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.4e-14 84.3 53 75.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.4e-14 84.3 53 75.5
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.3e-14 82.4 50 72.0
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 6.9e-14 82.0 52 73.1
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 9.0e-14 81.6 213 30.5
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 9.0e-14 81.6 213 30.5
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 7.6e-13 78.6 89 50.6
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 9.9e-13 78.2 53 69.8
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 1.9e-11 73.9 77 55.8
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 4.2e-11 72.8 88 46.6
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 5.5e-11 72.4 92 48.9
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 9.3e-11 71.6 101 41.6
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 1.2e-10 71.2 52 69.2
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.0e-09 68.2 78 48.7
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 2.3e-09 67.0 202 28.2
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 5.6e-08 62.4 45 71.1
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 9.6e-08 61.6 81 43.2
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 1.3e-07 61.2 44 70.5
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 1.4e-06 57.8 41 65.9
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 9.0e-06 55.1 44 63.6


User provided reference genes

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