Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g045580.1 Solanum lycopersicum HOM05D000654 ORTHO05D002616 4.3e-26 120.6 60 100.0
Solyc04g081260.3 Solanum lycopersicum HOM05D000654 ORTHO05D002616 8.3e-14 79.7 44 90.9
Sopen04g034880 Solanum pennellii HOM05D000654 ORTHO05D002616 8.3e-14 79.7 44 90.9
PGSC0003DMG400003724 Solanum tuberosum HOM05D000654 ORTHO05D002616 4.1e-13 77.4 44 86.4
Nitab4.5_0001242g0010 Nicotiana tabacum HOM05D000654 ORTHO05D002616 6.0e-12 73.6 44 81.8
Nitab4.5_0001988g0050 Nicotiana tabacum HOM05D000654 ORTHO05D002616 2.3e-11 71.6 44 84.1
Nitab4.5_0003536g0030 Nicotiana tabacum HOM05D000654 ORTHO05D002616 6.6e-11 70.1 44 79.5
Peaxi162Scf00438g00019 Petunia axillaris HOM05D000654 ORTHO05D002616 6.6e-11 70.1 44 79.5
Peaxi162Scf00186g00065 Petunia axillaris HOM05D000654 ORTHO05D002616 1.9e-10 68.6 44 77.3
ECA233G4620 Erigeron canadensis HOM05D000654 ORTHO05D002616 5.6e-10 67.0 44 72.7
Oeu007344.1 Olea europaea HOM05D000654 ORTHO05D002616 5.6e-10 67.0 42 83.3
Cc10_g01870 Coffea canephora HOM05D000654 ORTHO05D002616 9.5e-10 66.2 44 72.7
HanXRQChr12g0367181 Helianthus annuus HOM05D000654 ORTHO05D002616 1.2e-09 65.9 44 72.7
Manes.05G149600 Manihot esculenta HOM05D000654 ORTHO05D002616 1.6e-09 65.5 44 77.3
Actinidia15408 Actinidia chinensis HOM05D000654 ORTHO05D002616 2.1e-09 65.1 44 72.7
CiPaw.07G152200 Carya illinoinensis HOM05D000654 ORTHO05D002616 2.8e-09 64.7 44 72.7
MSTRG.1206 Avicennia marina HOM05D000654 ORTHO05D002616 3.6e-09 64.3 44 75.0
HanXRQChr16g0531801 Helianthus annuus HOM05D000654 ORTHO05D002616 3.6e-09 64.3 44 72.7
MSTRG.25231 Avicennia marina HOM05D000654 ORTHO05D002616 4.7e-09 63.9 44 72.7
CSS0047388 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 6.2e-09 63.5 44 72.7
PGR031G0929 Punica granatum HOM05D000654 ORTHO05D002616 6.2e-09 63.5 44 72.7
Cpa.g.sc26.28 Carica papaya HOM05D000654 ORTHO05D002616 8.1e-09 63.2 44 72.7
Dinv39504 Davidia involucrata HOM05D000654 ORTHO05D002616 1.1e-08 62.8 44 70.5
Rhsim06G0023100 Rhododendron simsii HOM05D000654 ORTHO05D002616 1.1e-08 62.8 44 72.7
TAR376G0849 Trochodendron aralioides HOM05D000654 ORTHO05D002616 1.4e-08 62.4 44 72.7
Haze_22613 Corylus avellana HOM05D000654 ORTHO05D002616 2.3e-08 61.6 47 63.8
CsaV3_3G045720 Cucumis sativus L. HOM05D000654 ORTHO05D002616 2.3e-08 61.6 44 70.5
Eucgr.F01634 Eucalyptus grandis HOM05D000654 ORTHO05D002616 2.3e-08 61.6 44 68.2
Manes.18G015200 Manihot esculenta HOM05D000654 ORTHO05D002616 2.3e-08 61.6 44 70.5
Lj4A27T23 Lonicera japonica HOM05D000654 ORTHO05D002616 3.1e-08 61.2 44 68.2
Aqoxy6G02311 Aquilegia oxysepala HOM05D000654 ORTHO05D002616 4.0e-08 60.8 44 68.2
FvH4_2g38730 Fragaria vesca HOM05D000654 ORTHO05D002616 4.0e-08 60.8 44 68.2
FAN15G1189 Fragaria x ananassa HOM05D000654 ORTHO05D002616 4.0e-08 60.8 44 68.2
Gohir.D06G001000 Gossypium hirsutum HOM05D000654 ORTHO05D002616 4.0e-08 60.8 44 70.5
Hma1.2p1_0638F.1_g193700 Hydrangea macrophylla HOM05D000654 ORTHO05D002616 4.0e-08 60.8 44 65.9
PGR083G0670 Punica granatum HOM05D000654 ORTHO05D002616 4.0e-08 60.8 44 68.2
Sabra02G0019900 Salix brachista HOM05D000654 ORTHO05D002616 4.0e-08 60.8 44 68.2
Atru.chr13.320 Acer truncatum HOM05D000654 ORTHO05D002616 5.2e-08 60.5 44 68.2
Gohir.A06G005200 Gossypium hirsutum HOM05D000654 ORTHO05D002616 5.2e-08 60.5 44 70.5
Lsat_1_v5_gn_8_30420 Lactuca sativa HOM05D000654 ORTHO05D002616 5.2e-08 60.5 44 65.9
MD08G1015000 Malus domestica HOM05D000654 ORTHO05D002616 5.2e-08 60.5 44 68.2
Potri.002G024400 Populus trichocarpa HOM05D000654 ORTHO05D002616 5.2e-08 60.5 44 68.2
Rhsim07G0246200 Rhododendron simsii HOM05D000654 ORTHO05D002616 5.2e-08 60.5 44 68.2
FAN27G3193 Fragaria x ananassa HOM05D000654 ORTHO05D002616 8.9e-08 59.7 44 65.9
Gorai.010G005400 Gossypium raimondii HOM05D000654 ORTHO05D002616 8.9e-08 59.7 44 68.2
SalBow7G4418 Salvia bowleyana HOM05D000654 ORTHO05D002616 8.9e-08 59.7 44 70.5
Actinidia37927 Actinidia chinensis HOM05D000654 ORTHO05D002616 1.2e-07 59.3 44 68.2
FAN20G2103 Fragaria x ananassa HOM05D000654 ORTHO05D002616 1.2e-07 59.3 44 65.9
Lj4A795T32 Lonicera japonica HOM05D000654 ORTHO05D002616 1.2e-07 59.3 44 65.9
MBI05_g37300_MAGBIO Magnolia biondii HOM05D000654 ORTHO05D002616 1.2e-07 59.3 44 68.2
Nn6g32311 Nelumbo nucifera HOM05D000654 ORTHO05D002616 1.2e-07 59.3 44 63.6
RcHm_v2.0_Chr6g0302571 Rosa chinensis HOM05D000654 ORTHO05D002616 1.2e-07 59.3 44 65.9
TAR628G0002 Trochodendron aralioides HOM05D000654 ORTHO05D002616 1.2e-07 59.3 44 70.5
Migut.C00813 Erythranthe guttata HOM05D000654 ORTHO05D002616 1.5e-07 58.9 44 65.9
Solyc04g064950.1 Solanum lycopersicum HOM05D000654 ORTHO05D002616 1.5e-07 58.9 42 78.6
Thecc.08G041600 Theobroma cacao HOM05D000654 ORTHO05D002616 1.5e-07 58.9 44 70.5
Hund05195 Selenicereus undatus HOM05D000654 ORTHO05D002616 2.0e-07 58.5 44 65.9
Sc02g0008480 Simmondsia chinensis HOM05D000654 ORTHO05D002616 2.0e-07 58.5 44 61.4
vmacro21714 Vaccinium macrocarpon HOM05D000654 ORTHO05D002616 2.0e-07 58.5 44 68.2
DCAR_009932 Daucus carota HOM05D000654 ORTHO05D002616 2.6e-07 58.2 44 63.6
Gohir.A01G111900 Gossypium hirsutum HOM05D000654 ORTHO05D002616 2.6e-07 58.2 45 68.9
Oeu054705.1 Olea europaea HOM05D000654 ORTHO05D002616 2.6e-07 58.2 44 65.9
Oeu054706.1 Olea europaea HOM05D000654 ORTHO05D002616 2.6e-07 58.2 44 65.9
Prupe.1G368000 Prunus persica HOM05D000654 ORTHO05D002616 2.6e-07 58.2 44 68.2
THA.LOC104806897 Tarenaya hassleriana HOM05D000654 ORTHO05D002616 2.6e-07 58.2 44 63.6
ClCG05G018460 Citrullus lanatus HOM05D000654 ORTHO05D002616 3.4e-07 57.8 44 68.2
Hma1.2p1_0337F.1_g129150 Hydrangea macrophylla HOM05D000654 ORTHO05D002616 3.4e-07 57.8 44 65.9
Oeu027546.2 Olea europaea HOM05D000654 ORTHO05D002616 3.4e-07 57.8 44 61.4
Sabra05G0183300 Salix brachista HOM05D000654 ORTHO05D002616 3.4e-07 57.8 44 63.6
MELO3C003764.2 Cucumis melo HOM05D000654 ORTHO05D002616 4.4e-07 57.4 44 68.2
Migut.N03149 Erythranthe guttata HOM05D000654 ORTHO05D002616 4.4e-07 57.4 45 62.2
Glyma.17G256900 Glycine max HOM05D000654 ORTHO05D002616 4.4e-07 57.4 44 65.9
TAR381G0060 Trochodendron aralioides HOM05D000654 ORTHO05D002616 4.4e-07 57.4 42 69.0
GSVIVG01009871001 Vitis vinifera HOM05D000654 ORTHO05D002616 4.4e-07 57.4 44 65.9
EL10Ac1g02272 Beta vulgaris HOM05D000654 ORTHO05D002616 5.8e-07 57.0 44 65.9
CANSAT25G1938 Cannabis sativa HOM05D000654 ORTHO05D002616 5.8e-07 57.0 44 70.5
Ciclev10000102m.g Citrus clementina HOM05D000654 ORTHO05D002616 5.8e-07 57.0 44 63.6
COL.COLO4_26167 Corchorus olitorius HOM05D000654 ORTHO05D002616 5.8e-07 57.0 44 65.9
Potri.005G237100 Populus trichocarpa HOM05D000654 ORTHO05D002616 5.8e-07 57.0 44 61.4
SGA_v2.0_scaffold92G28252 Striga asiatica HOM05D000654 ORTHO05D002616 5.8e-07 57.0 44 65.9
Sed0021577 Sechium edule HOM05D000654 ORTHO05D002616 7.6e-07 56.6 44 65.9
TWI36G1447 Tripterygium wilfordii HOM05D000654 ORTHO05D002616 7.6e-07 56.6 44 65.9
CiPaw.08G064900 Carya illinoinensis HOM05D000654 ORTHO05D002616 9.9e-07 56.2 44 61.4
Duzib116G0522 Durio zibethinus HOM05D000654 ORTHO05D002616 9.9e-07 56.2 44 68.2
Eucgr.F02084 Eucalyptus grandis HOM05D000654 ORTHO05D002616 9.9e-07 56.2 44 61.4
Sed0008717 Sechium edule HOM05D000654 ORTHO05D002616 9.9e-07 56.2 44 65.9
Nn5g29284 Nelumbo nucifera HOM05D000654 ORTHO05D002616 1.3e-06 55.8 44 63.6
SalBow8G5386 Salvia bowleyana HOM05D000654 ORTHO05D002616 1.3e-06 55.8 44 63.6
Ah.11g042800 Amaranthus hybridus HOM05D000654 ORTHO05D002616 1.7e-06 55.5 44 63.6
QL02p011137 Quercus lobata HOM05D000654 ORTHO05D002616 1.7e-06 55.5 44 65.9
BcaC05g25859 Brassica carinata HOM05D000654 ORTHO05D002616 2.2e-06 55.1 44 61.4
C05p18260 Brassica napus HOM05D000654 ORTHO05D002616 2.2e-06 55.1 44 61.4
BolC5t30533H Brassica oleracea HOM05D000654 ORTHO05D002616 2.2e-06 55.1 44 61.4
unitig_46.g17963 Utricularia gibba HOM05D000654 ORTHO05D002616 2.2e-06 55.1 44 63.6
BcaB07g32000 Brassica carinata HOM05D000654 ORTHO05D002616 2.9e-06 54.7 44 61.4
Cfa013930 Carpinus fangiana HOM05D000654 ORTHO05D002616 2.9e-06 54.7 44 61.4
Sc15g0005090 Simmondsia chinensis HOM05D000654 ORTHO05D002616 2.9e-06 54.7 44 56.8
vmacro04340 Vaccinium macrocarpon HOM05D000654 ORTHO05D002616 2.9e-06 54.7 44 63.6
AL1G54350 Arabidopsis lyrata HOM05D000654 ORTHO05D002616 3.7e-06 54.3 44 61.4
AT1G47900 Arabidopsis thaliana HOM05D000654 ORTHO05D002616 3.7e-06 54.3 44 61.4
CARHR037490 Cardamine hirsuta HOM05D000654 ORTHO05D002616 3.7e-06 54.3 44 61.4
AUR62035443 Chenopodium quinoa HOM05D000654 ORTHO05D002616 3.7e-06 54.3 44 61.4
AUR62035737 Chenopodium quinoa HOM05D000654 ORTHO05D002616 3.7e-06 54.3 44 61.4
Duzib041G0583 Durio zibethinus HOM05D000654 ORTHO05D002616 4.9e-06 53.9 44 65.9
Thhalv10006694m.g Eutrema salsugineum HOM05D000654 ORTHO05D002616 4.9e-06 53.9 44 61.4
Thhalv10011202m.g Eutrema salsugineum HOM05D000654 ORTHO05D002616 4.9e-06 53.9 44 61.4
Glyma.04G025400 Glycine max HOM05D000654 ORTHO05D002616 4.9e-06 53.9 44 61.4
TWI56G0963 Tripterygium wilfordii HOM05D000654 ORTHO05D002616 4.9e-06 53.9 44 61.4
VMungo0647G1333 Vigna mungo HOM05D000654 ORTHO05D002616 4.9e-06 53.9 44 63.6
TPR.G30293 Trifolium pratense HOM05D000654 ORTHO05D002616 6.4e-06 53.5 44 61.4
Aa31LG7G4340 Aethionema arabicum HOM05D000654 ORTHO05D002616 8.4e-06 53.1 44 61.4
arahy.Tifrunner.gnm1.ann1.2PR50U Arachis hypogaea HOM05D000654 ORTHO05D002616 8.4e-06 53.1 44 61.4
arahy.Tifrunner.gnm1.ann1.L8XTDX Arachis hypogaea HOM05D000654 ORTHO05D002616 8.4e-06 53.1 44 61.4
MSTRG.22335 Avicennia marina HOM05D000654 ORTHO05D002616 8.4e-06 53.1 43 62.8
Lj5g0005623 Lotus japonicus HOM05D000654 ORTHO05D002616 8.4e-06 53.1 44 59.1
SGA_v2.0_scaffold12G05984 Striga asiatica HOM05D000654 ORTHO05D002616 8.4e-06 53.1 44 54.5


User provided reference genes

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