Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g045570.3 Solanum lycopersicum HOM05D000654 ORTHO05D002616 2.9e-61 238.4 124 100.0
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 6.7e-34 147.5 86 90.7
PGSC0003DMG400015142 Solanum tuberosum HOM05D000654 ORTHO05D002616 3.6e-27 125.2 94 74.5
Oeu024531.1 Olea europaea HOM05D000654 ORTHO05D002616 1.3e-21 106.7 94 64.9
Peaxi162Scf00186g00065 Petunia axillaris HOM05D000654 ORTHO05D002616 2.9e-21 105.5 94 64.9
Actinidia37927 Actinidia chinensis HOM05D000654 ORTHO05D002616 1.1e-20 103.6 94 64.9
Rhsim06G0023100 Rhododendron simsii HOM05D000654 ORTHO05D002616 1.5e-20 103.2 94 62.8
MSTRG.25231 Avicennia marina HOM05D000654 ORTHO05D002616 2.5e-20 102.4 97 62.9
Oeu054705.1 Olea europaea HOM05D000654 ORTHO05D002616 3.2e-20 102.1 94 63.8
Ciclev10000102m.g Citrus clementina HOM05D000654 ORTHO05D002616 4.2e-20 101.7 110 53.6
Hma1.2p1_0638F.1_g193700 Hydrangea macrophylla HOM05D000654 ORTHO05D002616 4.2e-20 101.7 94 62.8
vmacro21714 Vaccinium macrocarpon HOM05D000654 ORTHO05D002616 1.2e-19 100.1 94 61.7
Lj4A795T32 Lonicera japonica HOM05D000654 ORTHO05D002616 2.1e-19 99.4 94 61.7
Oeu007344.1 Olea europaea HOM05D000654 ORTHO05D002616 2.1e-19 99.4 93 60.2
TAR376G0849 Trochodendron aralioides HOM05D000654 ORTHO05D002616 3.6e-19 98.6 97 57.7
Rhsim07G0246200 Rhododendron simsii HOM05D000654 ORTHO05D002616 6.1e-19 97.8 94 61.7
PGR031G0929 Punica granatum HOM05D000654 ORTHO05D002616 8.0e-19 97.4 94 60.6
Potri.005G237100 Populus trichocarpa HOM05D000654 ORTHO05D002616 1.4e-18 96.7 113 54.0
ECA233G4620 Erigeron canadensis HOM05D000654 ORTHO05D002616 2.3e-18 95.9 94 58.5
Medtr1g024095 Medicago truncatula HOM05D000654 ORTHO05D002616 3.0e-18 95.5 119 48.7
SalBow7G4418 Salvia bowleyana HOM05D000654 ORTHO05D002616 3.0e-18 95.5 94 56.4
Gohir.A06G005200 Gossypium hirsutum HOM05D000654 ORTHO05D002616 4.0e-18 95.1 95 57.9
Nn6g32311 Nelumbo nucifera HOM05D000654 ORTHO05D002616 4.0e-18 95.1 94 59.6
Psat6g003640 Pisum sativum HOM05D000654 ORTHO05D002616 4.0e-18 95.1 94 57.4
Sabra05G0183300 Salix brachista HOM05D000654 ORTHO05D002616 4.0e-18 95.1 92 59.8
Oeu027546.2 Olea europaea HOM05D000654 ORTHO05D002616 5.2e-18 94.7 94 59.6
Hund05195 Selenicereus undatus HOM05D000654 ORTHO05D002616 5.2e-18 94.7 94 58.5
Nitab4.5_0001242g0010 Nicotiana tabacum HOM05D000654 ORTHO05D002616 8.8e-18 94.0 94 59.6
Sabra02G0019900 Salix brachista HOM05D000654 ORTHO05D002616 1.2e-17 93.6 94 56.4
CiPaw.07G152200 Carya illinoinensis HOM05D000654 ORTHO05D002616 1.5e-17 93.2 94 58.5
Migut.C00813 Erythranthe guttata HOM05D000654 ORTHO05D002616 1.5e-17 93.2 93 58.1
Gohir.D06G001000 Gossypium hirsutum HOM05D000654 ORTHO05D002616 2.6e-17 92.4 95 55.8
Oeu046259.1 Olea europaea HOM05D000654 ORTHO05D002616 4.4e-17 91.7 126 46.8
Oeu054706.1 Olea europaea HOM05D000654 ORTHO05D002616 4.4e-17 91.7 94 58.5
Manes.05G149600 Manihot esculenta HOM05D000654 ORTHO05D002616 5.7e-17 91.3 95 55.8
ClCG05G018460 Citrullus lanatus HOM05D000654 ORTHO05D002616 7.5e-17 90.9 94 55.3
Eucgr.F02084 Eucalyptus grandis HOM05D000654 ORTHO05D002616 7.5e-17 90.9 94 57.4
Thhalv10006694m.g Eutrema salsugineum HOM05D000654 ORTHO05D002616 9.8e-17 90.5 97 50.5
Gorai.010G005400 Gossypium raimondii HOM05D000654 ORTHO05D002616 1.3e-16 90.1 95 54.7
vmacro04340 Vaccinium macrocarpon HOM05D000654 ORTHO05D002616 1.7e-16 89.7 94 56.4
SGA_v2.0_scaffold12G05984 Striga asiatica HOM05D000654 ORTHO05D002616 2.8e-16 89.0 93 55.9
TWI56G0963 Tripterygium wilfordii HOM05D000654 ORTHO05D002616 3.7e-16 88.6 94 54.3
AL1G32550 Arabidopsis lyrata HOM05D000654 ORTHO05D002616 4.8e-16 88.2 97 49.5
DCAR_022435 Daucus carota HOM05D000654 ORTHO05D002616 4.8e-16 88.2 94 54.3
Hma1.2p1_0337F.1_g129150 Hydrangea macrophylla HOM05D000654 ORTHO05D002616 4.8e-16 88.2 94 57.4
Lj1g0010484 Lotus japonicus HOM05D000654 ORTHO05D002616 6.3e-16 87.8 94 55.3
BcaB03g12899 Brassica carinata HOM05D000654 ORTHO05D002616 8.3e-16 87.4 97 49.5
AUR62035443 Chenopodium quinoa HOM05D000654 ORTHO05D002616 8.3e-16 87.4 94 54.3
SGA_v2.0_scaffold92G28252 Striga asiatica HOM05D000654 ORTHO05D002616 8.3e-16 87.4 93 52.7
Sed0008717 Sechium edule HOM05D000654 ORTHO05D002616 1.1e-15 87.0 94 53.2
Ca_13408_v3 Cicer arietinum L. HOM05D000654 ORTHO05D002616 1.4e-15 86.7 108 47.2
Duzib147G1082 Durio zibethinus HOM05D000654 ORTHO05D002616 1.8e-15 86.3 95 51.6
GSVIVG01018797001 Vitis vinifera HOM05D000654 ORTHO05D002616 2.4e-15 85.9 94 54.3
Cfa013930 Carpinus fangiana HOM05D000654 ORTHO05D002616 3.1e-15 85.5 94 55.3
unitig_46.g17963 Utricularia gibba HOM05D000654 ORTHO05D002616 3.1e-15 85.5 93 53.8
Haze_22613 Corylus avellana HOM05D000654 ORTHO05D002616 4.1e-15 85.1 94 55.3
CsaV3_3G045720 Cucumis sativus L. HOM05D000654 ORTHO05D002616 4.1e-15 85.1 94 52.1
Glyma.17G256900 Glycine max HOM05D000654 ORTHO05D002616 4.1e-15 85.1 94 51.1
unitig_37.g13016 Utricularia gibba HOM05D000654 ORTHO05D002616 4.1e-15 85.1 93 52.7
MELO3C003764.2 Cucumis melo HOM05D000654 ORTHO05D002616 5.4e-15 84.7 93 52.7
Phvul.001G008000 Phaseolus vulgaris HOM05D000654 ORTHO05D002616 5.4e-15 84.7 94 51.1
unitig_748.g7763 Utricularia gibba HOM05D000654 ORTHO05D002616 5.4e-15 84.7 94 50.0
TWI36G1447 Tripterygium wilfordii HOM05D000654 ORTHO05D002616 7.0e-15 84.3 94 51.1
Aqoxy6G02311 Aquilegia oxysepala HOM05D000654 ORTHO05D002616 9.1e-15 84.0 94 52.1
arahy.Tifrunner.gnm1.ann1.86KBF0 Arachis hypogaea HOM05D000654 ORTHO05D002616 9.1e-15 84.0 94 53.2
EL10Ac1g02272 Beta vulgaris HOM05D000654 ORTHO05D002616 1.2e-14 83.6 94 52.1
Psat5g015120 Pisum sativum HOM05D000654 ORTHO05D002616 1.2e-14 83.6 67 67.2
Carub.0001s3700 Capsella rubella HOM05D000654 ORTHO05D002616 1.6e-14 83.2 96 45.8
SalBow8G5386 Salvia bowleyana HOM05D000654 ORTHO05D002616 1.6e-14 83.2 93 53.8
Lalb_Chr24g0398761 Lupinus albus HOM05D000654 ORTHO05D002616 2.7e-14 82.4 94 51.1
RcHm_v2.0_Chr6g0302571 Rosa chinensis HOM05D000654 ORTHO05D002616 2.7e-14 82.4 101 48.5
Duzib041G0583 Durio zibethinus HOM05D000654 ORTHO05D002616 3.5e-14 82.0 94 52.1
Ah.11g042800 Amaranthus hybridus HOM05D000654 ORTHO05D002616 4.5e-14 81.6 94 47.9
Manes.18G015200 Manihot esculenta HOM05D000654 ORTHO05D002616 4.5e-14 81.6 95 51.6
AL1G54350 Arabidopsis lyrata HOM05D000654 ORTHO05D002616 5.9e-14 81.3 96 44.8
arahy.Tifrunner.gnm1.ann1.PJHC0L Arachis hypogaea HOM05D000654 ORTHO05D002616 5.9e-14 81.3 94 52.1
DCAR_017492 Daucus carota HOM05D000654 ORTHO05D002616 5.9e-14 81.3 94 53.2
Lalb_Chr14g0369801 Lupinus albus HOM05D000654 ORTHO05D002616 5.9e-14 81.3 94 48.9
AUR62035737 Chenopodium quinoa HOM05D000654 ORTHO05D002616 7.7e-14 80.9 94 52.1
TPR.G34368 Trifolium pratense HOM05D000654 ORTHO05D002616 7.7e-14 80.9 94 50.0
SGA_v2.0_scaffold11G05900 Striga asiatica HOM05D000654 ORTHO05D002616 1.0e-13 80.5 93 49.5
FAN20G2103 Fragaria x ananassa HOM05D000654 ORTHO05D002616 1.3e-13 80.1 95 48.4
FAN27G3193 Fragaria x ananassa HOM05D000654 ORTHO05D002616 1.3e-13 80.1 95 48.4
AT1G47900 Arabidopsis thaliana HOM05D000654 ORTHO05D002616 1.7e-13 79.7 96 44.8
unitig_3.g31659 Utricularia gibba HOM05D000654 ORTHO05D002616 2.9e-13 79.0 88 50.0
FvH4_2g38730 Fragaria vesca HOM05D000654 ORTHO05D002616 3.8e-13 78.6 95 47.4
Sc02g0008480 Simmondsia chinensis HOM05D000654 ORTHO05D002616 3.8e-13 78.6 97 48.5
CSS0047388 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 5.0e-13 78.2 94 52.1
Potri.002G024400 Populus trichocarpa HOM05D000654 ORTHO05D002616 5.0e-13 78.2 61 70.5
THA.LOC104806897 Tarenaya hassleriana HOM05D000654 ORTHO05D002616 6.5e-13 77.8 93 47.3
HPP92_001574 Vanilla planifolia HOM05D000654 ORTHO05D002616 6.5e-13 77.8 94 46.8
CSS0022991 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 8.5e-13 77.4 94 47.9
Thecc.01G020600 Theobroma cacao HOM05D000654 ORTHO05D002616 8.5e-13 77.4 94 50.0
TWI12G1258 Tripterygium wilfordii HOM05D000654 ORTHO05D002616 1.5e-12 76.6 101 49.5
Cc10_g01870 Coffea canephora HOM05D000654 ORTHO05D002616 1.9e-12 76.3 96 50.0
Glyma.14G217900 Glycine max HOM05D000654 ORTHO05D002616 1.9e-12 76.3 94 44.7
FAN15G1189 Fragaria x ananassa HOM05D000654 ORTHO05D002616 3.2e-12 75.5 86 51.2
CARHR037490 Cardamine hirsuta HOM05D000654 ORTHO05D002616 4.2e-12 75.1 90 42.2
arahy.Tifrunner.gnm1.ann1.L8XTDX Arachis hypogaea HOM05D000654 ORTHO05D002616 5.5e-12 74.7 94 46.8
Cpa.g.sc6.235 Carica papaya HOM05D000654 ORTHO05D002616 5.5e-12 74.7 96 46.9
PSO541G2907 Papaver somniferum HOM05D000654 ORTHO05D002616 7.2e-12 74.3 94 45.7
Sed0021577 Sechium edule HOM05D000654 ORTHO05D002616 7.2e-12 74.3 91 49.5
arahy.Tifrunner.gnm1.ann1.2PR50U Arachis hypogaea HOM05D000654 ORTHO05D002616 1.2e-11 73.6 94 45.7
Migut.N03149 Erythranthe guttata HOM05D000654 ORTHO05D002616 1.6e-11 73.2 94 48.9
Nitab4.5_0001988g0050 Nicotiana tabacum HOM05D000654 ORTHO05D002616 1.6e-11 73.2 94 48.9
DCAR_013857 Daucus carota HOM05D000654 ORTHO05D002616 2.7e-11 72.4 94 48.9
Atru.chr13.320 Acer truncatum HOM05D000654 ORTHO05D002616 3.6e-11 72.0 53 75.5
MD08G1015000 Malus domestica HOM05D000654 ORTHO05D002616 4.7e-11 71.6 97 47.4
Sc15g0005090 Simmondsia chinensis HOM05D000654 ORTHO05D002616 8.0e-11 70.9 97 45.4
Sp7g33900 Schrenkiella parvula HOM05D000654 ORTHO05D002616 1.0e-10 70.5 94 43.6
Gohir.D01G098800 Gossypium hirsutum HOM05D000654 ORTHO05D002616 1.8e-10 69.7 105 41.9
Medtr5g021810 Medicago truncatula HOM05D000654 ORTHO05D002616 1.8e-10 69.7 94 45.7
CiPaw.08G064900 Carya illinoinensis HOM05D000654 ORTHO05D002616 2.3e-10 69.3 94 48.9
Phvul.002G109900 Phaseolus vulgaris HOM05D000654 ORTHO05D002616 2.3e-10 69.3 96 45.8
C08p05830 Brassica napus HOM05D000654 ORTHO05D002616 4.0e-10 68.6 75 46.7
BolC8t47423H Brassica oleracea HOM05D000654 ORTHO05D002616 4.0e-10 68.6 75 46.7
HPP92_020981 Vanilla planifolia HOM05D000654 ORTHO05D002616 4.0e-10 68.6 97 42.3
CSS0032181 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 5.2e-10 68.2 88 54.5
Zm00001eb398680 Zea mays HOM05D000654 ORTHO05D002616 5.2e-10 68.2 94 42.6
AT1G19835 Arabidopsis thaliana HOM05D000654 ORTHO05D002616 8.8e-10 67.4 97 40.2
ATR0996G001 Amborella trichopoda HOM05D000654 ORTHO05D002616 1.2e-09 67.0 105 39.0
ATR0996G010 Amborella trichopoda HOM05D000654 ORTHO05D002616 1.2e-09 67.0 105 39.0
Ah.05g166680 Amaranthus hybridus HOM05D000654 ORTHO05D002616 2.0e-09 66.2 72 51.4
AL7G14920 Arabidopsis lyrata HOM05D000654 ORTHO05D002616 2.0e-09 66.2 94 40.4
Eucgr.I02359 Eucalyptus grandis HOM05D000654 ORTHO05D002616 2.0e-09 66.2 95 42.1
Gohir.A11G041700 Gossypium hirsutum HOM05D000654 ORTHO05D002616 2.0e-09 66.2 70 51.4
Gorai.002G124100 Gossypium raimondii HOM05D000654 ORTHO05D002616 2.0e-09 66.2 97 42.3
VMungo0647G1333 Vigna mungo HOM05D000654 ORTHO05D002616 2.0e-09 66.2 94 43.6
CARHR020330 Cardamine hirsuta HOM05D000654 ORTHO05D002616 2.6e-09 65.9 96 39.6
Glyma.11G076100 Glycine max HOM05D000654 ORTHO05D002616 2.6e-09 65.9 94 44.7
Gorai.007G048300 Gossypium raimondii HOM05D000654 ORTHO05D002616 2.6e-09 65.9 69 52.2
C05p18260 Brassica napus HOM05D000654 ORTHO05D002616 3.4e-09 65.5 54 63.0
unitig_749.g13858 Utricularia gibba HOM05D000654 ORTHO05D002616 3.4e-09 65.5 57 63.2
CSS0035468 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 5.7e-09 64.7 87 52.9
Ca_24911_v3 Cicer arietinum L. HOM05D000654 ORTHO05D002616 5.7e-09 64.7 96 42.7
Nitab4.5_0003536g0030 Nicotiana tabacum HOM05D000654 ORTHO05D002616 5.7e-09 64.7 94 45.7
BcaC05g25859 Brassica carinata HOM05D000654 ORTHO05D002616 7.5e-09 64.3 53 64.2
BolC5t30533H Brassica oleracea HOM05D000654 ORTHO05D002616 7.5e-09 64.3 53 64.2
Thhalv10024308m.g Eutrema salsugineum HOM05D000654 ORTHO05D002616 7.5e-09 64.3 94 40.4
Lj2g0028163 Lotus japonicus HOM05D000654 ORTHO05D002616 7.5e-09 64.3 85 43.5
BcaB07g32000 Brassica carinata HOM05D000654 ORTHO05D002616 9.8e-09 63.9 94 39.4
A06p15960 Brassica napus HOM05D000654 ORTHO05D002616 9.8e-09 63.9 50 66.0
BraA06t24706Z Brassica rapa HOM05D000654 ORTHO05D002616 9.8e-09 63.9 50 66.0
QL02p011137 Quercus lobata HOM05D000654 ORTHO05D002616 9.8e-09 63.9 47 72.3
BcaC07g37187 Brassica carinata HOM05D000654 ORTHO05D002616 1.7e-08 63.2 70 44.3
Gohir.A01G111900 Gossypium hirsutum HOM05D000654 ORTHO05D002616 1.7e-08 63.2 97 41.2
Gohir.D11G045000 Gossypium hirsutum HOM05D000654 ORTHO05D002616 1.7e-08 63.2 66 51.5
Thecc.08G041600 Theobroma cacao HOM05D000654 ORTHO05D002616 1.7e-08 63.2 110 40.0
CARHR244520 Cardamine hirsuta HOM05D000654 ORTHO05D002616 2.2e-08 62.8 100 39.0
PSO675G7683 Papaver somniferum HOM05D000654 ORTHO05D002616 2.8e-08 62.4 81 43.2
PSO170G6790 Papaver somniferum HOM05D000654 ORTHO05D002616 3.7e-08 62.0 105 38.1
arahy.Tifrunner.gnm1.ann1.0H1B5V Arachis hypogaea HOM05D000654 ORTHO05D002616 4.9e-08 61.6 123 39.8
arahy.Tifrunner.gnm1.ann1.T3YNI7 Arachis hypogaea HOM05D000654 ORTHO05D002616 4.9e-08 61.6 94 42.6
BcaB04g17474 Brassica carinata HOM05D000654 ORTHO05D002616 4.9e-08 61.6 68 44.1
CSS0042532 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 4.9e-08 61.6 88 50.0
CDE05G0850 Ceratophyllum demersum HOM05D000654 ORTHO05D002616 4.9e-08 61.6 96 40.6
VMungo1215G0356 Vigna mungo HOM05D000654 ORTHO05D002616 4.9e-08 61.6 94 43.6
CSS0041562 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 1.1e-07 60.5 88 50.0
Dinv39505 Davidia involucrata HOM05D000654 ORTHO05D002616 1.1e-07 60.5 56 62.5
Lalb_Chr09g0321821 Lupinus albus HOM05D000654 ORTHO05D002616 1.4e-07 60.1 93 41.9
A01p02620 Brassica napus HOM05D000654 ORTHO05D002616 1.8e-07 59.7 94 39.4
BraA01t00248Z Brassica rapa HOM05D000654 ORTHO05D002616 1.8e-07 59.7 94 39.4
Sp1g34850 Schrenkiella parvula HOM05D000654 ORTHO05D002616 1.8e-07 59.7 70 40.0
Zm00001eb010560 Zea mays HOM05D000654 ORTHO05D002616 5.4e-07 58.2 94 36.2
AT4G36120 Arabidopsis thaliana HOM05D000654 ORTHO05D002616 7.0e-07 57.8 94 37.2
SHI08079 Sapria himalayana HOM05D000654 ORTHO05D002616 7.0e-07 57.8 94 35.1
A08p05390 Brassica napus HOM05D000654 ORTHO05D002616 9.2e-07 57.4 70 41.4
BraA08t32543Z Brassica rapa HOM05D000654 ORTHO05D002616 9.2e-07 57.4 70 41.4
Thhalv10011202m.g Eutrema salsugineum HOM05D000654 ORTHO05D002616 9.2e-07 57.4 68 39.7
Os10g0162400 Oryza sativa ssp. japonica HOM05D000654 ORTHO05D002616 9.2e-07 57.4 94 36.2
Actinidia15408 Actinidia chinensis HOM05D000654 ORTHO05D002616 1.2e-06 57.0 94 42.6
Lalb_Chr11g0061971 Lupinus albus HOM05D000654 ORTHO05D002616 1.2e-06 57.0 94 40.4
BcaB07g33806 Brassica carinata HOM05D000654 ORTHO05D002616 1.6e-06 56.6 68 38.2
DCAR_009932 Daucus carota HOM05D000654 ORTHO05D002616 2.0e-06 56.2 99 39.4
CDE02G0587 Ceratophyllum demersum HOM05D000654 ORTHO05D002616 5.9e-06 54.7 94 35.1


User provided reference genes

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