Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g045400.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 6.9e-110 400.6 195 100.0
Sopen07g023950 Solanum pennellii HOM05D005764 ORTHO05D006600 2.9e-108 395.2 195 98.5
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 7.2e-107 390.6 195 96.4
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 1.3e-87 326.6 195 79.0
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 3.8e-31 139.0 177 42.9
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 1.6e-29 133.7 177 42.9
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 1.6e-29 133.7 177 42.9
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 7.8e-29 131.3 176 42.6
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.1e-27 127.5 195 35.9
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 9.6e-27 124.4 161 42.9
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 2.8e-26 122.9 161 40.4
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 3.6e-26 122.5 204 35.3
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 4.8e-26 122.1 161 42.2
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 6.2e-26 121.7 171 41.5
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 1.8e-25 120.2 161 41.6
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 4.0e-25 119.0 171 40.4
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 5.3e-25 118.6 161 41.6
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 5.3e-25 118.6 161 41.6
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 5.3e-25 118.6 164 40.2
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 6.9e-25 118.2 162 42.6
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 9.0e-25 117.9 202 35.6
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 9.0e-25 117.9 174 39.1
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.6e-24 116.3 187 35.3
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 3.4e-24 115.9 162 42.0
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 3.4e-24 115.9 187 35.3
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 4.5e-24 115.5 173 41.0
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 4.5e-24 115.5 168 37.5
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 8.4e-23 111.3 177 36.7
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 1.4e-22 110.5 162 40.7
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 7.1e-22 108.2 178 37.1
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 1.2e-21 107.5 195 34.9
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.2e-21 107.5 160 38.1
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 1.6e-21 107.1 171 39.8
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 3.5e-21 105.9 168 38.1
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 4.6e-21 105.5 161 37.9
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 4.6e-21 105.5 161 37.9
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 6.0e-21 105.1 162 42.0
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 6.0e-21 105.1 184 39.1
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 7.9e-21 104.8 161 37.9
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 1.3e-20 104.0 161 39.1
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 1.8e-20 103.6 165 37.6
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 1.8e-20 103.6 180 35.0
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 2.3e-20 103.2 161 36.6
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 5.1e-20 102.1 161 36.0
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 6.7e-20 101.7 167 36.5
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 6.7e-20 101.7 163 31.9
HanXRQChr09g0273911 Helianthus annuus HOM05D005764 ORTHO05D006600 8.7e-20 101.3 199 34.7
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 1.5e-19 100.5 179 36.9
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 1.9e-19 100.1 160 36.2
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 4.3e-19 99.0 154 40.9
QL04p006829 Quercus lobata HOM05D000056 ORTHO05D000019 4.3e-19 99.0 160 38.8
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 4.3e-19 99.0 160 38.8
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 5.6e-19 98.6 150 37.3
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 9.6e-19 97.8 151 39.1
vmacro19171 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.3e-18 97.4 194 34.5
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 2.1e-18 96.7 173 34.1
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 2.1e-18 96.7 160 37.5
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 2.8e-18 96.3 207 33.8
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 3.7e-18 95.9 172 36.6
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 4.8e-18 95.5 160 36.9
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 8.1e-18 94.7 201 31.8
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 8.1e-18 94.7 162 35.8
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 1.8e-17 93.6 159 39.0
RcHm_v2.0_Chr2g0162681 Rosa chinensis HOM05D005764 ORTHO05D006600 1.8e-17 93.6 153 36.6
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 2.4e-17 93.2 159 37.1
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 2.4e-17 93.2 159 37.1
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 4.0e-17 92.4 142 36.6
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 5.3e-17 92.0 199 36.2
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 9.0e-17 91.3 162 34.6
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 1.5e-16 90.5 143 36.4
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.5e-16 90.5 190 34.7
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 2.0e-16 90.1 159 35.2
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 2.6e-16 89.7 159 35.8
CDE05G2510 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 2.6e-16 89.7 134 38.8
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 3.4e-16 89.4 151 36.4
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 5.8e-16 88.6 151 36.4
Atru.chr1.4150 Acer truncatum HOM05D005764 ORTHO05D006600 1.3e-15 87.4 151 37.1
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 1.3e-15 87.4 166 34.9
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 2.9e-15 86.3 165 33.9
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 3.8e-15 85.9 159 35.8
HanXRQChr03g0075031 Helianthus annuus HOM05D005764 ORTHO05D006600 3.8e-15 85.9 187 32.1
Lsat_1_v5_gn_4_84661 Lactuca sativa HOM05D005764 ORTHO05D006600 6.4e-15 85.1 180 32.2
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 8.4e-15 84.7 160 35.6
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 1.4e-14 84.0 159 35.2
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 1.4e-14 84.0 159 33.3
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 1.4e-14 84.0 162 34.0
BraA06t25809Z Brassica rapa HOM05D005764 ORTHO05D006600 2.4e-14 83.2 159 35.2
A06p28690 Brassica napus HOM05D005764 ORTHO05D006600 3.2e-14 82.8 159 35.2
C03p65110 Brassica napus HOM05D005764 ORTHO05D006600 9.3e-14 81.3 159 34.6
BolC3t18765H Brassica oleracea HOM05D005764 ORTHO05D006600 9.3e-14 81.3 159 34.6
Lsat_1_v5_gn_9_103540 Lactuca sativa HOM05D005764 ORTHO05D006600 1.6e-13 80.5 167 28.1
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 3.5e-13 79.3 159 33.3
Sp2g25170 Schrenkiella parvula HOM05D005764 ORTHO05D006600 7.9e-13 78.2 159 31.4
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.3e-12 77.4 152 34.9
MELO3C011746.2 Cucumis melo HOM05D005764 ORTHO05D006600 3.9e-12 75.9 119 37.0
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 1.3e-10 70.9 151 31.8
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 1.6e-10 70.5 36 83.3
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 2.1e-10 70.1 161 31.7
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 5.3e-09 65.5 90 42.2
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 5.3e-09 65.5 163 24.5
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.7e-07 60.5 88 42.0
CiPaw.09G087900 Carya illinoinensis HOM05D007956 ORTHO05D010152 2.2e-07 60.1 155 25.2
HPP92_025492 Vanilla planifolia HOM05D005764 ORTHO05D006600 2.2e-07 60.1 106 31.1
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 2.9e-07 59.7 90 41.1
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 3.8e-07 59.3 154 27.9
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 4.9e-07 58.9 167 26.9
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 6.5e-07 58.5 180 27.2
Nitab4.5_0006992g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.1e-06 57.8 36 75.0
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.4e-06 57.4 158 27.8
Actinidia05532 Actinidia chinensis HOM05D007956 ORTHO05D010152 3.2e-06 56.2 174 27.6
Haze_06747 Corylus avellana HOM05D007956 ORTHO05D010152 3.2e-06 56.2 169 26.0
RcHm_v2.0_Chr1g0325241 Rosa chinensis HOM05D005764 ORTHO05D006600 7.1e-06 55.1 70 45.7


User provided reference genes

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