Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.1e-259 899.4 470 100.0
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 2.6e-259 898.3 470 99.8
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 1.1e-254 882.9 470 97.9
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 3.6e-237 824.7 470 90.4
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 5.2e-236 820.8 470 92.3
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 7.5e-235 817.0 491 89.4
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 1.3e-234 816.2 470 90.0
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 4.8e-234 814.3 470 88.7
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 4.8e-234 814.3 470 89.1
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 6.3e-234 813.9 470 92.3
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 1.4e-233 812.8 470 89.4
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.8e-233 812.4 470 89.1
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.8e-233 812.4 470 88.5
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 4.1e-233 811.2 470 89.6
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 5.4e-233 810.8 470 89.4
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 2.0e-232 808.9 470 89.6
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 4.5e-232 807.7 470 89.4
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.0e-231 806.6 470 87.9
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 1.0e-231 806.6 470 88.1
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 2.9e-231 805.1 470 87.7
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 2.9e-231 805.1 470 88.7
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 2.9e-231 805.1 470 87.9
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 3.8e-231 804.7 470 88.7
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 8.6e-231 803.5 469 88.1
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 8.6e-231 803.5 470 89.1
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 1.5e-230 802.7 471 87.5
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.2e-229 799.7 470 87.9
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 1.6e-229 799.3 470 87.9
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 2.1e-229 798.9 470 87.2
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 4.7e-229 797.7 470 87.4
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 6.1e-229 797.3 470 87.7
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 8.0e-229 797.0 470 88.5
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.0e-228 796.6 471 86.8
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 1.2e-227 793.1 507 82.6
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.7e-227 790.8 470 86.8
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 7.5e-227 790.4 470 86.6
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 7.5e-227 790.4 470 86.6
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 9.8e-227 790.0 463 88.1
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 9.8e-227 790.0 469 88.3
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.7e-226 789.3 470 86.4
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 4.9e-226 787.7 470 86.4
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 4.9e-226 787.7 470 86.4
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.8e-225 785.8 470 86.4
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 4.1e-225 784.6 470 86.4
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 9.2e-225 783.5 470 86.0
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.2e-224 783.1 470 85.7
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.6e-224 782.7 469 86.4
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.6e-224 782.7 507 80.7
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.0e-224 782.3 472 85.8
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 3.5e-224 781.6 471 85.8
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.7e-223 779.2 470 86.8
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 3.8e-223 778.1 470 85.3
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 5.0e-223 777.7 469 84.9
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 6.6e-223 777.3 471 85.4
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 6.6e-223 777.3 470 86.0
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 6.6e-223 777.3 494 82.8
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 9.5e-222 773.5 470 85.5
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 2.6e-219 765.4 469 84.6
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 9.8e-219 763.5 470 84.9
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.3e-218 763.1 470 84.5
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 1.7e-218 762.7 470 83.4
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 2.4e-217 758.8 450 88.4
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 2.4e-217 758.8 470 83.6
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 3.2e-217 758.4 470 83.2
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 4.1e-217 758.1 470 83.6
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 7.0e-217 757.3 470 83.2
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 9.2e-217 756.9 546 75.3
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 1.2e-216 756.5 470 83.4
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.2e-216 756.5 470 83.4
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 2.0e-216 755.7 470 83.4
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 2.0e-216 755.7 470 83.4
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 2.0e-216 755.7 470 83.4
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.7e-216 755.4 470 83.8
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 4.6e-216 754.6 470 83.0
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.3e-214 748.4 470 81.7
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.2e-213 746.5 470 81.9
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 3.6e-213 745.0 471 82.2
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 3.6e-213 745.0 471 82.2
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.6e-213 745.0 470 82.1
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 4.7e-213 744.6 470 82.8
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 4.7e-213 744.6 470 82.8
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 2.0e-211 739.2 472 81.8
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 2.6e-211 738.8 498 78.5
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 7.5e-211 737.3 470 80.6
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 9.8e-211 736.9 493 79.5
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.7e-210 736.1 494 78.3
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 2.9e-210 735.3 441 85.7
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 8.3e-202 707.2 418 87.6
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 4.3e-198 694.9 470 79.8
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.5e-195 686.4 398 88.9
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 9.9e-195 683.7 461 79.4
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.7e-194 682.9 418 85.2
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 2.2e-194 682.6 418 84.4
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 2.2e-194 682.6 418 84.4
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 1.2e-189 666.8 470 71.9
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 5.2e-188 661.4 423 81.1
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.6e-187 659.1 384 89.8
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.2e-185 652.1 470 76.0
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 4.0e-172 608.6 350 88.3
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 7.6e-171 604.4 465 65.8
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 3.2e-169 599.0 373 82.3
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 6.2e-165 584.7 374 80.7
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 2.4e-164 582.8 341 90.6
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 4.9e-162 575.1 471 60.7
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 4.9e-162 575.1 470 67.2
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.3e-157 560.5 365 81.9
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 2.9e-154 549.3 323 91.0
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 2.6e-139 499.6 312 79.5
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.8e-132 476.9 282 88.7
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 5.3e-132 475.3 365 69.9
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 3.0e-127 459.5 246 99.6
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 4.1e-124 449.1 323 76.8
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 3.3e-97 359.8 182 97.8
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 8.9e-87 325.1 249 71.5
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.9e-85 320.1 173 89.0
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.6e-82 308.5 302 57.6
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.3e-81 306.6 192 84.9
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 7.3e-81 305.4 505 37.8
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 7.3e-73 278.9 210 58.6
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 6.2e-72 275.8 294 54.1
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 3.0e-66 256.9 161 86.3
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 6.7e-58 229.2 195 67.7
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.5e-57 227.3 407 41.3
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 1.3e-56 224.9 139 87.8
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 7.1e-52 209.1 120 92.5
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 3.1e-47 193.7 492 30.1
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 4.5e-46 189.9 322 37.0
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.4e-44 184.9 107 78.5
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 4.2e-44 183.3 105 80.0
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.2e-43 181.8 112 86.6
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 7.9e-43 179.1 111 85.6
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.0e-37 162.2 92 92.4
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 7.7e-30 136.0 76 86.8
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 2.7e-27 127.5 72 83.3
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.7e-27 126.7 74 82.4
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 4.7e-27 126.7 72 83.3
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 1.4e-26 125.2 71 84.5
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.8e-26 124.8 78 82.1
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.0e-26 124.0 72 80.6
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 3.7e-24 117.1 79 73.4
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 1.8e-23 114.8 99 65.7
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.8e-23 114.8 57 94.7
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.9e-20 104.8 57 86.0
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.0e-13 82.4 50 84.0
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.3e-13 82.0 52 86.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.7e-13 81.6 57 77.2
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.2e-13 81.3 46 95.7
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 8.5e-13 79.3 74 60.8
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 1.2e-11 75.5 44 86.4


User provided reference genes

Program Settings