Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 8.2e-238 826.6 410 100.0
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 5.5e-234 813.9 410 98.0
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 2.8e-161 572.4 382 75.7
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 5.5e-157 558.1 320 86.6
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 2.2e-129 466.5 403 61.5
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 3.1e-128 462.6 347 69.5
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.7e-126 456.8 404 58.9
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 4.2e-125 452.2 400 57.0
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 2.6e-122 443.0 397 57.2
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 7.4e-122 441.4 396 56.8
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.3e-113 414.1 478 48.7
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.5e-109 400.6 531 44.4
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 2.8e-76 290.0 416 39.4
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 6.2e-76 288.9 407 39.3
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 4.4e-74 282.7 410 39.5
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 2.2e-73 280.4 414 39.1
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 2.1e-71 273.9 395 39.7
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 5.1e-70 269.2 396 37.6
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 3.1e-67 260.0 409 36.4
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 4.0e-67 259.6 432 36.1
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 6.8e-67 258.8 398 36.9
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.5e-66 257.7 395 36.2
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 2.6e-66 256.9 393 35.6
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 3.4e-66 256.5 436 35.1
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 4.9e-65 252.7 412 35.7
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 1.1e-64 251.5 423 35.9
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 1.4e-64 251.1 400 34.5
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 1.0e-62 245.0 402 35.3
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 1.0e-62 245.0 404 36.9
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.3e-62 244.6 397 36.8
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 5.6e-61 239.2 172 73.8
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 9.6e-61 238.4 400 35.8
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 1.1e-59 235.0 408 35.5
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 4.0e-59 233.0 402 33.8
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 9.0e-59 231.9 419 34.1
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 1.2e-58 231.5 391 33.2
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 1.2e-58 231.5 395 35.7
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.5e-58 231.1 410 33.7
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 2.0e-58 230.7 397 34.5
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 4.4e-58 229.6 405 33.8
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 5.8e-58 229.2 406 34.0
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 7.6e-58 228.8 397 34.5
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 7.6e-58 228.8 397 34.5
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 9.9e-58 228.4 404 33.9
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 2.2e-57 227.3 409 35.2
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 2.9e-57 226.9 334 40.4
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 3.8e-57 226.5 390 34.4
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 3.8e-57 226.5 408 33.6
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 1.9e-56 224.2 390 35.1
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 3.2e-56 223.4 401 33.7
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 9.3e-56 221.9 390 34.1
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 9.3e-56 221.9 343 35.6
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.1e-55 220.7 406 33.5
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 1.0e-54 218.4 388 36.3
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 1.7e-54 217.6 412 34.0
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 3.0e-54 216.9 410 33.7
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 8.7e-54 215.3 406 33.5
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 3.3e-53 213.4 409 33.3
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 4.3e-53 213.0 394 32.7
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.3e-53 213.0 397 32.7
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 5.6e-53 212.6 388 36.1
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.6e-53 212.6 397 33.2
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 1.3e-52 211.5 401 30.7
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 1.6e-52 211.1 398 33.9
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.8e-52 210.3 188 53.2
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 3.6e-52 209.9 405 32.1
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 6.2e-52 209.1 401 32.4
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 1.4e-51 208.0 393 31.3
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 6.9e-51 205.7 404 31.7
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 9.0e-51 205.3 396 32.6
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 1.5e-50 204.5 404 31.4
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 5.8e-50 202.6 396 32.1
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.2e-49 200.7 433 30.3
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.9e-49 200.3 433 30.9
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 3.8e-49 199.9 396 32.1
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 4.9e-49 199.5 327 37.0
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 4.9e-49 199.5 394 31.2
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 2.4e-48 197.2 397 31.5
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.6e-47 194.5 434 30.4
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 1.6e-47 194.5 386 34.2
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 1.3e-46 191.4 386 33.9
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 3.9e-46 189.9 405 30.6
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 5.1e-46 189.5 438 29.0
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 6.7e-46 189.1 331 32.9
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 1.1e-45 188.3 429 28.2
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 5.6e-45 186.0 410 29.8
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 9.6e-45 185.3 326 32.8
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.3e-41 174.9 561 25.8
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 1.7e-41 174.5 403 30.8
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 1.7e-41 174.5 372 30.6
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.8e-41 173.3 418 27.5
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 3.8e-41 173.3 404 28.0
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.4e-40 171.4 404 27.7
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 1.9e-40 171.0 332 33.7
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 2.5e-40 170.6 414 26.8
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.5e-40 170.6 414 26.8
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 4.2e-40 169.9 371 28.8
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 4.2e-40 169.9 426 27.0
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 2.1e-39 167.5 399 29.3
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 8.2e-36 155.6 422 27.7
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.9e-35 152.5 350 28.9
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.2e-34 151.8 428 25.9
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.2e-33 147.5 456 25.2
CAN.G437.8 Capsicum annuum HOM05D003575 ORTHO05D003587 4.2e-32 143.3 94 80.9
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 4.6e-31 139.8 390 28.7
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 4.6e-31 139.8 180 36.7
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 6.1e-31 139.4 261 34.1
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.1e-31 139.4 398 27.6
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 7.9e-31 139.0 392 27.3
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 1.0e-30 138.7 350 25.7
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 2.3e-30 137.5 193 40.9
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 2.3e-30 137.5 282 32.3
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 1.5e-29 134.8 164 39.6
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 2.8e-28 130.6 173 39.9
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 6.3e-28 129.4 167 35.9
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 8.2e-28 129.0 336 27.1
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 3.4e-26 123.6 188 35.1
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 2.9e-25 120.6 172 37.2
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 2.9e-25 120.6 171 38.0
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 5.0e-25 119.8 185 38.4
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 6.5e-25 119.4 163 35.6
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 6.5e-25 119.4 289 30.4
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 8.5e-25 119.0 166 34.9
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 1.1e-24 118.6 172 42.4
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 1.1e-24 118.6 380 23.7
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 1.4e-24 118.2 166 34.9
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 1.4e-24 118.2 166 34.9
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 1.4e-24 118.2 166 34.9
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 3.2e-24 117.1 201 29.9
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 5.5e-24 116.3 168 33.9
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 7.2e-24 115.9 166 34.9
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 7.2e-24 115.9 183 35.5
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 7.2e-24 115.9 183 35.5
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 9.4e-24 115.5 174 37.4
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 9.4e-24 115.5 113 49.6
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-23 115.2 153 39.9
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 1.6e-23 114.8 160 38.8
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 4.6e-23 113.2 168 33.3
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 4.6e-23 113.2 166 35.5
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 6.1e-23 112.8 152 36.8
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 1.0e-22 112.1 153 39.2
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 1.0e-22 112.1 196 30.1
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 5.1e-22 109.8 172 32.0
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 1.5e-21 108.2 173 31.2
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 2.5e-21 107.5 163 33.1
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 5.7e-21 106.3 177 34.5
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 2.8e-20 104.0 166 34.9
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-19 101.7 177 33.9
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 1.8e-19 101.3 181 30.4
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 1.8e-19 101.3 101 48.5
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 5.3e-19 99.8 182 35.7
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 5.3e-19 99.8 150 35.3
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 3.4e-18 97.1 101 44.6
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 7.7e-18 95.9 154 35.7
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 1.0e-17 95.5 161 33.5
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 1.7e-17 94.7 161 31.7
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.2e-17 94.4 169 34.3
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 2.2e-17 94.4 161 36.6
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.9e-17 94.0 120 42.5
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.9e-17 94.0 169 34.3
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.0e-17 93.2 169 34.3
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 6.5e-17 92.8 197 31.0
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 7.2e-16 89.4 108 45.4
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-15 88.6 166 31.3
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 4.7e-15 86.7 128 32.0
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 6.7e-14 82.8 106 39.6
Oeu041110.1 Olea europaea HOM05D003575 ORTHO05D003587 6.7e-14 82.8 130 34.6
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 9.7e-13 79.0 100 37.0
Mapoly0021s0099 Marchantia polymorpha HOM05D003575 ORTHO05D003587 1.7e-12 78.2 164 29.9
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 3.1e-11 73.9 93 36.6
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 3.1e-11 73.9 93 36.6
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 7.0e-11 72.8 102 37.3
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.5e-10 70.1 219 23.7
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 5.9e-10 69.7 135 31.1
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-09 68.6 94 34.0
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 2.9e-09 67.4 137 29.9
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 3.8e-09 67.0 93 35.5
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 3.8e-09 67.0 153 28.8
Dinv26594 Davidia involucrata HOM05D000074 ORTHO05D001293 2.5e-08 64.3 79 45.6
Mapoly0072s0063 Marchantia polymorpha HOM05D040683 ORTHO05D003587 3.2e-08 63.9 220 27.3
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 7.2e-08 62.8 103 37.9
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 1.2e-07 62.0 64 50.0
EL10Ac6g15056 Beta vulgaris HOM05D003575 ORTHO05D003587 2.1e-07 61.2 68 35.3
Glyma.15G224002 Glycine max HOM05D003575 ORTHO05D003587 8.8e-06 55.8 72 38.9


User provided reference genes

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