Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 2.4e-33 144.8 69 100.0
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 9.2e-25 116.3 57 96.5
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 9.2e-25 116.3 57 96.5
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 9.2e-25 116.3 57 96.5
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 2.7e-24 114.8 57 94.7
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 6.0e-24 113.6 57 93.0
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 6.0e-24 113.6 57 91.2
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 7.8e-24 113.2 57 91.2
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 7.8e-24 113.2 57 91.2
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 7.8e-24 113.2 57 91.2
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 7.8e-24 113.2 57 93.0
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.0e-23 112.8 57 91.2
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.0e-23 112.8 57 91.2
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 1.0e-23 112.8 57 91.2
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.3e-23 112.5 57 91.2
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.7e-23 112.1 57 89.5
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.7e-23 112.1 57 93.0
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 1.7e-23 112.1 57 87.7
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 2.3e-23 111.7 57 89.5
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 2.3e-23 111.7 57 89.5
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 3.0e-23 111.3 57 89.5
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.0e-23 111.3 57 89.5
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 3.9e-23 110.9 57 87.7
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 3.9e-23 110.9 57 87.7
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 3.9e-23 110.9 57 89.5
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 3.9e-23 110.9 57 89.5
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 3.9e-23 110.9 57 89.5
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 5.1e-23 110.5 57 87.7
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.1e-23 110.5 57 87.7
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 5.1e-23 110.5 57 87.7
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 6.6e-23 110.2 57 89.5
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 6.6e-23 110.2 57 87.7
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 6.6e-23 110.2 57 87.7
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 8.6e-23 109.8 57 86.0
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 8.6e-23 109.8 57 86.0
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 8.6e-23 109.8 57 86.0
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 8.6e-23 109.8 57 86.0
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 8.6e-23 109.8 57 86.0
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 8.6e-23 109.8 57 87.7
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 8.6e-23 109.8 57 86.0
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.1e-22 109.4 57 86.0
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.5e-22 109.0 57 86.0
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 1.5e-22 109.0 57 86.0
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 2.5e-22 108.2 57 84.2
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 2.5e-22 108.2 57 86.0
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 3.3e-22 107.8 57 84.2
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 4.3e-22 107.5 57 82.5
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 7.3e-22 106.7 57 87.7
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 9.6e-22 106.3 57 86.0
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.2e-21 105.9 57 86.0
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.2e-21 105.9 57 87.7
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.2e-21 105.9 57 86.0
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 1.6e-21 105.5 57 87.7
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 2.1e-21 105.1 57 86.0
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 3.6e-21 104.4 65 76.9
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 4.7e-21 104.0 57 82.5
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 6.2e-21 103.6 65 76.9
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 6.2e-21 103.6 57 82.5
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 6.2e-21 103.6 57 84.2
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 8.1e-21 103.2 57 80.7
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 8.1e-21 103.2 57 84.2
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.1e-20 102.8 57 84.2
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 1.1e-20 102.8 57 84.2
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.1e-20 102.8 57 80.7
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.4e-20 102.4 57 84.2
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.4e-20 102.4 57 82.5
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.4e-20 101.7 57 82.5
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 2.4e-20 101.7 57 82.5
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 3.1e-20 101.3 57 82.5
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 3.1e-20 101.3 57 82.5
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 3.1e-20 101.3 57 82.5
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 3.1e-20 101.3 57 82.5
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 3.1e-20 101.3 57 82.5
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 3.1e-20 101.3 57 82.5
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 3.1e-20 101.3 57 86.0
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 4.0e-20 100.9 57 78.9
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 4.0e-20 100.9 57 82.5
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.0e-20 100.9 57 82.5
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 5.2e-20 100.5 57 80.7
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 6.9e-20 100.1 57 80.7
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 6.9e-20 100.1 57 80.7
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 6.9e-20 100.1 57 80.7
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 8.9e-20 99.8 57 80.7
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 8.9e-20 99.8 57 80.7
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.2e-19 99.4 57 78.9
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 1.5e-19 99.0 57 80.7
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.5e-19 99.0 57 80.7
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.5e-19 99.0 57 80.7
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.5e-19 99.0 57 80.7
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.5e-19 99.0 57 80.7
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 1.5e-19 99.0 57 78.9
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.5e-19 99.0 57 78.9
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.5e-19 99.0 57 78.9
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 1.5e-19 99.0 57 80.7
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 2.0e-19 98.6 57 80.7
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 2.6e-19 98.2 57 78.9
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 2.6e-19 98.2 57 78.9
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.4e-19 97.8 57 77.2
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 9.9e-19 96.3 57 77.2
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 9.9e-19 96.3 57 77.2
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 2.2e-18 95.1 57 77.2
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 8.4e-18 93.2 57 75.4
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 7.1e-17 90.1 57 71.9
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 1.6e-16 89.0 57 68.4
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 6.0e-16 87.0 57 63.2
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 1.0e-15 86.3 57 63.2
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 1.0e-15 86.3 45 86.7
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 1.5e-14 82.4 46 78.3
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.5e-14 81.6 57 57.9
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 5.8e-11 70.5 52 67.3
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.3e-07 59.3 32 78.1
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.3e-07 59.3 30 83.3
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 8.7e-07 56.6 31 80.6


User provided reference genes

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