Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 6.1e-25 116.7 60 100.0
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 3.1e-24 114.4 60 98.3
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.7e-19 98.6 60 85.0
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 2.2e-14 81.6 59 74.6
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 1.4e-13 79.0 58 72.4
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 1.9e-13 78.6 57 75.4
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.9e-13 78.6 62 67.7
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 1.9e-13 78.6 62 67.7
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 1.6e-12 75.5 58 70.7
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 4.6e-12 73.9 60 70.0
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 3.9e-11 70.9 58 63.8
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 8.6e-11 69.7 60 66.7
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 5.6e-10 67.0 58 65.5
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.2e-09 65.9 59 64.4
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.2e-09 65.9 59 64.4
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 1.2e-09 65.9 50 68.0
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 2.1e-09 65.1 59 59.3
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 4.7e-09 63.9 56 60.7
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 6.2e-09 63.5 58 58.6
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 6.2e-09 63.5 56 58.9
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 6.2e-09 63.5 57 59.6
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 6.2e-09 63.5 54 64.8
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 8.1e-09 63.2 50 66.0
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.1e-08 62.8 49 61.2
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.4e-08 62.4 58 58.6
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 1.8e-08 62.0 42 71.4
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.8e-08 62.0 47 63.8
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 2.3e-08 61.6 51 62.7
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 3.1e-08 61.2 50 64.0
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 3.1e-08 61.2 53 60.4
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.1e-08 61.2 60 56.7
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 3.1e-08 61.2 55 56.4
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 4.0e-08 60.8 44 65.9
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 4.0e-08 60.8 52 61.5
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 5.2e-08 60.5 45 68.9
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 6.8e-08 60.1 44 68.2
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 6.8e-08 60.1 54 64.8
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 8.9e-08 59.7 52 63.5
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 8.9e-08 59.7 44 63.6
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 8.9e-08 59.7 58 62.1
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 8.9e-08 59.7 58 62.1
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 1.2e-07 59.3 54 61.1
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 1.2e-07 59.3 55 60.0
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 1.5e-07 58.9 52 63.5
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 1.5e-07 58.9 52 63.5
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.5e-07 58.9 46 67.4
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 1.5e-07 58.9 54 63.0
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 1.5e-07 58.9 44 63.6
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.5e-07 58.9 62 58.1
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 2.0e-07 58.5 43 65.1
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.0e-07 58.5 54 63.0
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.0e-07 58.5 54 63.0
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 2.0e-07 58.5 56 58.9
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 2.6e-07 58.2 52 63.5
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 2.6e-07 58.2 50 60.0
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.4e-07 57.8 42 69.0
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 3.4e-07 57.8 50 58.0
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 3.4e-07 57.8 53 56.6
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 3.4e-07 57.8 42 61.9
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 3.4e-07 57.8 62 56.5
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 4.4e-07 57.4 56 60.7
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 5.8e-07 57.0 46 63.0
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 5.8e-07 57.0 46 63.0
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 5.8e-07 57.0 32 81.2
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 5.8e-07 57.0 52 61.5
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 7.6e-07 56.6 45 62.2
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 7.6e-07 56.6 48 58.3
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 9.9e-07 56.2 56 55.4
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 9.9e-07 56.2 50 58.0
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 9.9e-07 56.2 41 68.3
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 9.9e-07 56.2 41 68.3
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 9.9e-07 56.2 39 64.1
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 9.9e-07 56.2 59 55.9
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 9.9e-07 56.2 55 56.4
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 9.9e-07 56.2 55 56.4
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 9.9e-07 56.2 55 56.4
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 9.9e-07 56.2 55 56.4
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 9.9e-07 56.2 39 71.8
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 1.3e-06 55.8 49 59.2
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 1.3e-06 55.8 46 63.0
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 1.3e-06 55.8 52 61.5
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 1.3e-06 55.8 46 63.0
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 1.7e-06 55.5 50 68.0
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.7e-06 55.5 54 55.6
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 1.7e-06 55.5 59 59.3
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 1.7e-06 55.5 49 61.2
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 2.2e-06 55.1 51 58.8
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.2e-06 55.1 53 60.4
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 2.2e-06 55.1 52 57.7
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 2.9e-06 54.7 39 71.8
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 2.9e-06 54.7 49 61.2
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 2.9e-06 54.7 46 56.5
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 2.9e-06 54.7 47 55.3
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 2.9e-06 54.7 57 56.1
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 2.9e-06 54.7 60 55.0
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 2.9e-06 54.7 41 65.9
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 3.7e-06 54.3 56 53.6
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 3.7e-06 54.3 49 59.2
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 3.7e-06 54.3 36 66.7
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 3.7e-06 54.3 39 71.8
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 3.7e-06 54.3 50 60.0
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 3.7e-06 54.3 48 58.3
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 4.9e-06 53.9 46 58.7
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 4.9e-06 53.9 46 58.7
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 4.9e-06 53.9 48 60.4
ECA236G2479 Erigeron canadensis HOM05D006736 ORTHO05D008459 4.9e-06 53.9 41 63.4
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 4.9e-06 53.9 48 60.4
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 4.9e-06 53.9 50 58.0
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 4.9e-06 53.9 46 58.7
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 6.4e-06 53.5 49 57.1
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.4e-06 53.5 54 53.7
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 6.4e-06 53.5 54 53.7
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 8.4e-06 53.1 62 58.1
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 8.4e-06 53.1 46 60.9
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 8.4e-06 53.1 46 60.9
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 8.4e-06 53.1 46 60.9
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 8.4e-06 53.1 42 66.7


User provided reference genes

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