Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 0.0e+00 2510.3 1368 100.0
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 0.0e+00 2440.2 1368 97.7
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 0.0e+00 1670.2 1353 70.1
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 0.0e+00 1624.8 1366 68.7
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 0.0e+00 1528.1 1340 65.6
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 4.3e-182 643.3 1384 36.6
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 9.0e-180 635.6 1395 36.8
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 3.5e-176 623.6 1365 36.3
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 1.8e-156 558.1 1451 34.0
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 3.8e-154 550.4 1395 34.6
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 2.2e-146 524.6 1443 34.3
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 4.2e-145 520.4 1481 32.7
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 1.6e-144 518.5 1404 32.1
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 7.4e-142 509.6 1519 31.5
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 1.3e-141 508.8 1408 32.0
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 1.3e-141 508.8 1392 33.0
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 8.2e-141 506.1 1462 32.4
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 1.5e-139 501.9 1456 32.6
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 6.1e-136 490.0 1346 31.8
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 1.0e-135 489.2 1369 33.4
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 5.2e-135 486.9 1351 31.8
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 6.5e-130 469.9 1435 32.0
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 2.1e-128 464.9 1432 31.7
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 3.4e-126 457.6 967 36.9
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 8.3e-125 453.0 1470 31.2
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 1.8e-124 451.8 1422 30.4
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.6e-123 448.7 1410 30.5
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 5.9e-123 446.8 1387 32.2
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 1.1e-121 442.6 1461 30.0
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.6e-120 438.7 1417 31.1
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 4.0e-119 434.1 1257 31.7
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 1.3e-117 429.1 1400 30.5
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 4.5e-115 420.6 1413 30.4
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 5.9e-115 420.2 1413 29.4
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 9.5e-113 412.9 1432 30.0
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 1.6e-112 412.1 1422 30.4
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 3.4e-110 404.4 1230 31.0
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 5.7e-110 403.7 1461 30.3
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 2.9e-109 401.4 1391 30.7
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 5.4e-108 397.1 1400 30.5
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 5.9e-107 393.7 1432 29.9
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 7.8e-107 393.3 1365 29.7
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 7.8e-107 393.3 1394 30.7
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.7e-106 392.1 1403 30.5
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 2.3e-106 391.7 1403 29.7
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 8.6e-106 389.8 1360 30.1
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 4.3e-105 387.5 1399 29.9
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 2.1e-104 385.2 1409 30.7
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.6e-102 378.3 1407 29.9
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 3.4e-102 377.9 1394 30.2
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 5.8e-102 377.1 1412 28.7
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 1.7e-98 365.5 1407 28.4
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.3e-98 365.2 1283 29.9
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 4.0e-95 354.4 1362 28.0
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 2.2e-93 348.6 1425 27.7
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 9.2e-92 343.2 1399 28.1
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 2.7e-91 341.7 1393 26.9
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 1.3e-90 339.3 1373 27.7
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 1.2e-88 332.8 1354 27.2
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 2.3e-87 328.6 1346 28.4
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 4.0e-87 327.8 1527 28.1
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.2e-86 326.2 1354 28.1
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.2e-86 326.2 1354 28.1
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 6.4e-85 320.5 1370 26.4
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 7.1e-84 317.0 1350 26.4
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 2.8e-80 305.1 1359 26.8
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 6.2e-80 303.9 1247 28.5
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 1.2e-78 299.7 1393 26.4
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 2.0e-78 298.9 1358 26.4
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 2.0e-78 298.9 1358 26.4
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 4.4e-78 297.7 1571 25.7
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 5.8e-78 297.4 342 48.2
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 7.6e-78 297.0 1373 26.9
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 9.9e-78 296.6 1365 26.7
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 2.9e-77 295.0 1270 28.8
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 8.4e-77 293.5 1428 27.8
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.2e-76 291.2 814 30.8
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 5.4e-76 290.8 1359 26.3
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 6.6e-74 283.9 821 29.8
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 1.3e-72 279.6 1447 25.6
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.1e-72 278.9 1439 25.7
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 1.1e-71 276.6 1369 25.6
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 1.4e-71 276.2 1372 25.7
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 3.1e-71 275.0 1394 25.5
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 5.4e-68 264.2 486 35.2
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 1.0e-66 260.0 1440 27.6
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 8.7e-66 256.9 1172 28.5
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 6.9e-63 247.3 1391 26.1
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.0e-62 245.7 1356 26.2
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 1.1e-60 240.0 1394 25.8
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 2.7e-59 235.3 457 35.9
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 4.6e-59 234.6 510 33.9
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 5.1e-58 231.1 1385 25.1
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 6.7e-58 230.7 389 36.0
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 1.1e-57 229.9 124 94.4
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 4.3e-57 228.0 413 34.1
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 4.8e-56 224.6 802 31.9
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 8.1e-56 223.8 1382 25.8
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 6.9e-55 220.7 1355 25.3
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.3e-53 216.5 578 31.7
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 5.5e-52 211.1 1567 24.2
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 7.9e-51 207.2 591 29.6
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 1.8e-50 206.1 390 37.2
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 6.7e-50 204.1 466 31.3
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 6.7e-50 204.1 383 36.0
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 2.5e-49 202.2 1355 24.1
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.9e-45 188.7 270 40.7
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 3.2e-44 185.3 279 41.6
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 6.1e-43 181.0 315 37.5
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.4e-39 169.9 683 26.8
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 6.9e-39 167.5 341 41.1
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 2.1e-35 156.0 493 28.4
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 4.3e-33 148.3 161 48.4
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 2.4e-31 142.5 252 45.2
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 8.5e-29 134.0 322 37.3
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 2.7e-27 129.0 146 42.5
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 2.2e-24 119.4 250 38.4
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 2.0e-22 112.8 265 39.6
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 2.2e-21 109.4 127 47.2
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 1.9e-20 106.3 392 33.2
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 3.1e-15 89.0 91 51.6
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 1.2e-14 87.0 267 28.5
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 5.5e-12 78.2 146 31.5
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 8.8e-10 70.9 126 41.3
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 1.5e-09 70.1 123 44.7
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 2.6e-09 69.3 116 48.3
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 3.4e-09 68.9 119 32.8
Actinidia12354 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.3e-08 67.0 57 54.4
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.2e-08 66.2 181 33.7
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 4.8e-08 65.1 101 34.7
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 6.3e-08 64.7 85 51.8
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.3e-08 64.7 118 47.5
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.8e-07 63.2 118 45.8
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 7.0e-07 61.2 275 27.3


User provided reference genes

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