Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 4.0e-131 471.5 241 100.0
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 3.1e-128 461.8 241 97.5
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 3.6e-124 448.4 241 95.0
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 1.9e-109 399.4 242 85.5
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 7.3e-109 397.5 241 85.1
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 1.5e-106 389.8 242 82.6
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 2.5e-69 266.2 243 56.8
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 3.3e-69 265.8 242 54.1
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 6.9e-67 258.1 242 54.5
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 9.0e-67 257.7 242 53.7
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 2.0e-66 256.5 243 56.4
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 3.8e-65 252.3 243 52.3
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 7.1e-64 248.1 243 51.0
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 1.2e-63 247.3 242 56.2
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 1.0e-62 244.2 243 53.1
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 2.3e-62 243.0 243 53.9
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 5.1e-62 241.9 243 52.3
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 3.3e-61 239.2 243 51.9
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.3e-61 239.2 243 51.9
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 4.3e-61 238.8 242 51.7
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.3e-60 237.3 243 51.9
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 3.6e-60 235.7 243 51.4
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 6.2e-60 235.0 245 51.4
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 8.1e-60 234.6 243 46.9
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 3.1e-59 232.6 243 50.2
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 9.0e-59 231.1 242 51.7
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 1.5e-58 230.3 244 50.4
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 3.4e-58 229.2 243 48.1
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 4.5e-58 228.8 243 48.6
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 1.3e-57 227.3 241 49.4
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 1.3e-57 227.3 242 53.3
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 1.9e-56 223.4 243 47.7
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 3.2e-56 222.6 245 47.3
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 4.2e-56 222.2 232 49.1
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 7.1e-56 221.5 242 47.9
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 2.1e-55 219.9 245 47.3
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 6.0e-55 218.4 244 47.5
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 6.0e-55 218.4 200 56.5
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 1.3e-54 217.2 244 47.1
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 1.3e-54 217.2 244 45.5
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 6.7e-54 214.9 243 45.3
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 8.7e-54 214.5 243 49.8
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.5e-53 213.8 246 48.4
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 2.5e-53 213.0 244 44.7
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 9.6e-53 211.1 244 45.5
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 4.8e-52 208.8 244 44.7
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 4.8e-52 208.8 242 46.3
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 6.2e-52 208.4 245 46.5
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 8.1e-52 208.0 243 43.2
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 1.8e-51 206.8 243 42.4
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 2.4e-51 206.5 247 46.2
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 4.0e-51 205.7 243 47.3
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 5.3e-51 205.3 201 52.7
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 6.9e-51 204.9 243 43.2
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 6.9e-51 204.9 244 46.7
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 6.9e-51 204.9 243 44.9
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 1.5e-50 203.8 243 44.0
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 1.5e-50 203.8 243 44.0
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 3.4e-50 202.6 243 44.4
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 3.4e-50 202.6 243 44.4
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 3.4e-50 202.6 243 44.4
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 7.6e-50 201.4 243 45.7
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 7.6e-50 201.4 245 43.3
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 7.6e-50 201.4 244 45.5
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 2.9e-49 199.5 247 42.5
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 3.8e-49 199.1 266 42.1
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 1.1e-48 197.6 242 42.6
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 1.4e-48 197.2 247 42.1
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 4.6e-47 192.2 243 42.8
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 6.0e-47 191.8 244 43.4
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 6.7e-46 188.3 222 44.6
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 1.9e-45 186.8 188 49.5
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 1.3e-44 184.1 244 41.4
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 2.8e-44 183.0 237 43.5
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 3.7e-44 182.6 174 52.3
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 3.1e-43 179.5 168 52.4
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 5.0e-41 172.2 205 42.9
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.1e-40 171.0 292 34.2
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 3.6e-39 166.0 181 47.5
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 6.7e-38 161.8 240 35.8
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 7.4e-37 158.3 244 38.9
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 9.7e-37 157.9 249 38.6
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.3e-36 157.5 243 38.7
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 2.2e-36 156.8 247 38.5
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 3.7e-36 156.0 249 38.2
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 4.8e-36 155.6 249 36.9
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 8.2e-36 154.8 247 38.5
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 2.4e-35 153.3 244 34.8
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 5.3e-35 152.1 177 42.9
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 3.4e-34 149.4 247 38.5
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 4.5e-34 149.1 239 40.2
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 1.3e-33 147.5 95 80.0
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 8.5e-33 144.8 251 35.5
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 3.6e-31 139.4 236 35.6
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 6.7e-30 135.2 205 36.6
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 1.5e-29 134.0 166 39.8
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 6.9e-27 125.2 175 40.0
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 7.9e-23 111.7 249 30.1
Peaxi162Scf00289g00039 Petunia axillaris HOM05D007471 ORTHO05D009481 6.5e-17 92.0 77 64.9
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.1e-08 64.7 63 50.8
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 1.6e-07 60.8 61 47.5
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.6e-07 60.8 77 40.3
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 1.6e-07 60.8 69 43.5


User provided reference genes

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