Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g042950.1 Solanum lycopersicum HOM05D003852 ORTHO05D003095 3.3e-106 388.3 179 100.0
Sopen07g022540 Solanum pennellii HOM05D003852 ORTHO05D003095 2.8e-105 385.2 179 99.4
CAN.G275.1 Capsicum annuum HOM05D000667 ORTHO05D003095 5.6e-98 360.9 178 90.4
Nitab4.5_0000170g0260 Nicotiana tabacum HOM05D003852 ORTHO05D003095 6.8e-96 354.0 178 88.8
Peaxi162Scf01347g00015 Petunia axillaris HOM05D003852 ORTHO05D003095 8.3e-94 347.1 179 86.6
Nitab4.5_0000807g0200 Nicotiana tabacum HOM05D003852 ORTHO05D003095 8.9e-88 327.0 169 86.4
DCAR_026921 Daucus carota HOM05D003852 ORTHO05D003095 7.6e-71 270.8 177 67.2
Lj6A705G44 Lonicera japonica HOM05D000667 ORTHO05D003095 1.6e-68 263.1 177 64.4
Gohir.A13G165200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 5.6e-66 254.6 176 62.5
Gohir.D13G168200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 9.6e-66 253.8 176 62.5
Gorai.013G193900 Gossypium raimondii HOM05D000667 ORTHO05D003095 9.6e-66 253.8 176 62.5
THA.LOC104812401 Tarenaya hassleriana HOM05D000667 ORTHO05D003095 2.1e-65 252.7 177 61.0
Sp1g14460 Schrenkiella parvula HOM05D000667 ORTHO05D003095 3.1e-64 248.8 178 60.1
AT1G16250 Arabidopsis thaliana HOM05D000667 ORTHO05D003095 4.0e-64 248.4 177 61.0
Carub.0001s1599 Capsella rubella HOM05D000667 ORTHO05D003095 4.0e-64 248.4 177 61.0
Thecc.05G247000 Theobroma cacao HOM05D000667 ORTHO05D003095 5.3e-64 248.1 174 62.1
CiPaw.01G126800 Carya illinoinensis HOM05D000667 ORTHO05D003095 6.9e-64 247.7 177 61.6
AL1G28370 Arabidopsis lyrata HOM05D000667 ORTHO05D003095 1.5e-63 246.5 177 60.5
CARHR016720 Cardamine hirsuta HOM05D000667 ORTHO05D003095 1.5e-63 246.5 177 59.9
COL.COLO4_32975 Corchorus olitorius HOM05D000667 ORTHO05D003095 2.0e-63 246.1 178 59.6
C08p44570 Brassica napus HOM05D001040 ORTHO05D002795 2.6e-63 245.7 177 59.9
BolC8t52002H Brassica oleracea HOM05D000667 ORTHO05D003095 2.6e-63 245.7 177 59.9
QL06p014826 Quercus lobata HOM05D000667 ORTHO05D003095 3.4e-63 245.4 176 59.7
Prupe.1G209000 Prunus persica HOM05D000667 ORTHO05D003095 7.6e-63 244.2 177 61.0
C08p17400 Brassica napus HOM05D001040 ORTHO05D002795 1.0e-62 243.8 178 59.6
BolC8t49366H Brassica oleracea HOM05D001040 ORTHO05D002795 1.0e-62 243.8 178 59.6
A08p31390 Brassica napus HOM05D001040 ORTHO05D002795 1.7e-62 243.0 178 59.6
BraA08t35062Z Brassica rapa HOM05D001040 ORTHO05D002795 1.7e-62 243.0 178 59.6
Thhalv10007905m.g Eutrema salsugineum HOM05D000667 ORTHO05D003095 2.9e-62 242.3 177 59.3
Duzib106G1028 Durio zibethinus HOM05D000667 ORTHO05D003095 1.1e-61 240.4 178 57.3
RcHm_v2.0_Chr4g0428071 Rosa chinensis HOM05D000667 ORTHO05D003095 1.4e-61 240.0 177 59.9
Eucgr.H04148 Eucalyptus grandis HOM05D000667 ORTHO05D003095 3.2e-61 238.8 177 60.5
MD13G1136500 Malus domestica HOM05D003852 ORTHO05D003095 3.2e-61 238.8 177 58.8
MD16G1131800 Malus domestica HOM05D000667 ORTHO05D003095 3.2e-61 238.8 177 59.9
Potri.010G004500 Populus trichocarpa HOM05D000667 ORTHO05D003095 4.2e-61 238.4 177 57.6
Aa31LG7G770 Aethionema arabicum HOM05D000667 ORTHO05D003095 5.5e-61 238.0 178 59.0
Duzib177G0493 Durio zibethinus HOM05D000667 ORTHO05D003095 9.3e-61 237.3 172 59.9
FAN17G1110 Fragaria x ananassa HOM05D000667 ORTHO05D003095 9.3e-61 237.3 178 58.4
FvH4_4g21831 Fragaria vesca HOM05D000667 ORTHO05D003095 2.1e-60 236.1 174 59.2
Haze_00743 Corylus avellana HOM05D003852 ORTHO05D003095 3.5e-60 235.3 178 60.1
FAN07G0487 Fragaria x ananassa HOM05D000667 ORTHO05D003095 3.5e-60 235.3 178 57.9
FAN12G3400 Fragaria x ananassa HOM05D000667 ORTHO05D003095 3.5e-60 235.3 174 59.2
Sabra10G0003900 Salix brachista HOM05D000667 ORTHO05D003095 3.5e-60 235.3 178 57.9
TAR636G3298 Trochodendron aralioides HOM05D000667 ORTHO05D003095 6.0e-60 234.6 174 58.6
Manes.12G040400 Manihot esculenta HOM05D000667 ORTHO05D003095 1.0e-59 233.8 174 58.0
Atru.chr4.3194 Acer truncatum HOM05D003852 ORTHO05D003095 2.3e-59 232.6 174 57.5
Aqoxy5G02870 Aquilegia oxysepala HOM05D000667 ORTHO05D003095 2.3e-59 232.6 174 58.0
PSO170G0139 Papaver somniferum HOM05D000667 ORTHO05D003095 1.1e-56 223.8 174 56.9
PSO357G0139 Papaver somniferum HOM05D000667 ORTHO05D003095 1.1e-56 223.8 174 56.9
PGR004G1039 Punica granatum HOM05D000667 ORTHO05D003095 9.0e-56 220.7 177 53.7
BcaB03g13046 Brassica carinata HOM05D001040 ORTHO05D002795 1.1e-53 213.8 155 58.7
Eucgr.H04146 Eucalyptus grandis HOM05D000667 ORTHO05D003095 5.1e-51 204.9 177 53.7
BcaB02g06604 Brassica carinata HOM05D000667 ORTHO05D003095 1.5e-50 203.4 174 53.4
FAN12G0044 Fragaria x ananassa HOM05D003852 ORTHO05D003095 4.2e-45 185.3 135 58.5
A06p12170 Brassica napus HOM05D003852 ORTHO05D003095 1.4e-37 160.2 183 47.5
BcaC05g25592 Brassica carinata HOM05D003852 ORTHO05D003095 2.5e-37 159.5 177 46.9
BolC5t30167H Brassica oleracea HOM05D000667 ORTHO05D003095 3.0e-35 152.5 184 45.7
Mapoly0057s0100 Marchantia polymorpha HOM05D000667 ORTHO05D003095 1.5e-29 133.7 176 38.6
SEGI_10708 Sequoiadendron giganteum HOM05D000667 ORTHO05D003095 7.4e-26 121.3 175 36.0
C05p14410 Brassica napus HOM05D003852 ORTHO05D003095 1.5e-21 107.1 179 35.2
AagrBONN_evm.TU.Sc2ySwM_344.5202 Anthoceros agrestis HOM05D000667 ORTHO05D003095 7.2e-21 104.8 148 34.5
Actinidia24553 Actinidia chinensis HOM05D000667 ORTHO05D003095 2.1e-20 103.2 81 53.1
BraA06t24385Z Brassica rapa HOM05D003852 ORTHO05D003095 3.0e-19 99.4 179 34.1
ATR0796G263 Amborella trichopoda HOM05D007183 ORTHO05D003095 4.5e-15 85.5 180 32.8


User provided reference genes

Program Settings