Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 9.1e-90 333.6 170 100.0
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 9.1e-90 333.6 170 100.0
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 6.1e-78 294.3 165 91.5
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 4.1e-74 281.6 174 84.5
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 3.5e-73 278.5 174 83.9
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 1.4e-66 256.5 162 77.2
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.2e-65 253.4 158 79.7
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.7e-64 249.6 159 76.1
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 1.7e-64 249.6 159 76.1
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 3.8e-64 248.4 165 75.8
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 6.5e-64 247.7 160 75.6
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 6.5e-64 247.7 159 76.1
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 4.2e-63 245.0 160 76.2
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 7.2e-63 244.2 162 75.9
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 9.5e-63 243.8 162 74.7
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 9.5e-63 243.8 162 75.9
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 9.5e-63 243.8 160 76.2
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 2.1e-62 242.7 161 75.8
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.7e-62 242.3 159 76.7
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 4.7e-62 241.5 163 74.8
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 1.8e-61 239.6 163 74.8
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 3.0e-61 238.8 162 71.6
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 4.0e-61 238.4 162 71.6
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 6.8e-61 237.7 164 70.1
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 1.2e-60 236.9 167 70.1
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 2.0e-60 236.1 167 68.9
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 2.6e-60 235.7 162 71.6
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 4.4e-60 235.0 157 74.5
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 5.7e-60 234.6 173 68.8
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 5.7e-60 234.6 160 74.4
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 9.8e-60 233.8 157 75.8
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 4.9e-59 231.5 156 72.4
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 6.3e-59 231.1 160 73.8
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 6.3e-59 231.1 162 73.5
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 5.4e-58 228.0 161 71.4
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 5.4e-58 228.0 160 71.2
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 9.2e-58 227.3 167 67.7
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 9.2e-58 227.3 162 70.4
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.2e-57 226.9 166 69.3
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 2.0e-57 226.1 154 71.4
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 2.7e-57 225.7 158 71.5
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 5.9e-57 224.6 162 67.9
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 5.9e-57 224.6 167 65.9
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.0e-56 223.8 173 65.9
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 2.3e-56 222.6 162 66.0
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 3.8e-56 221.9 154 69.5
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 3.8e-56 221.9 164 67.1
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 3.8e-56 221.9 158 69.0
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 8.6e-56 220.7 162 66.7
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 1.1e-55 220.3 167 65.9
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 1.5e-55 219.9 158 68.4
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.5e-55 219.9 161 65.8
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 1.5e-55 219.9 161 65.8
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 1.5e-55 219.9 164 68.9
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.5e-55 219.9 162 66.0
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 2.5e-55 219.2 161 64.6
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 2.5e-55 219.2 161 64.6
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 4.3e-55 218.4 172 65.7
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 5.6e-55 218.0 170 65.9
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 7.3e-55 217.6 172 65.7
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 7.3e-55 217.6 164 68.3
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 2.1e-54 216.1 161 64.0
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 2.1e-54 216.1 161 64.0
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 2.1e-54 216.1 161 64.0
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.8e-54 215.7 163 65.6
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 2.8e-54 215.7 162 64.8
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 2.8e-54 215.7 170 65.3
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 6.1e-54 214.5 141 73.0
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.0e-53 213.8 158 65.2
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 1.4e-53 213.4 162 64.8
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 1.8e-53 213.0 169 60.9
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.3e-53 212.6 172 64.0
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 6.8e-53 211.1 163 65.6
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 8.9e-53 210.7 162 68.5
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 8.9e-53 210.7 137 76.6
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 1.2e-52 210.3 158 65.8
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.0e-52 209.5 161 65.8
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 3.4e-52 208.8 163 65.6
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 9.8e-52 207.2 163 63.8
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 1.1e-50 203.8 165 63.6
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 1.4e-50 203.4 156 62.8
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 1.4e-50 203.4 173 63.6
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 1.8e-50 203.0 163 63.8
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 1.8e-50 203.0 163 62.0
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 3.2e-50 202.2 163 64.4
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 7.0e-50 201.1 200 53.5
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 7.0e-50 201.1 163 61.3
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 1.2e-49 200.3 231 48.5
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 2.0e-49 199.5 163 62.0
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 2.7e-49 199.1 138 72.5
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 2.7e-49 199.1 163 63.2
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 2.7e-49 199.1 159 62.9
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 4.6e-49 198.4 134 74.6
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 5.9e-49 198.0 165 60.0
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 1.7e-48 196.4 148 64.9
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 3.0e-48 195.7 163 63.2
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 3.9e-48 195.3 143 72.0
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 1.1e-47 193.7 159 59.7
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 2.5e-47 192.6 146 69.2
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 1.2e-46 190.3 150 66.0
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.4e-45 186.8 132 68.9
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 2.0e-44 183.0 137 67.9
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 1.3e-43 180.3 146 67.8
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 3.7e-43 178.7 159 56.6
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 1.4e-42 176.8 148 58.8
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 1.4e-42 176.8 139 62.6
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 2.7e-41 172.6 108 75.9
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 3.9e-40 168.7 137 61.3
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 3.3e-39 165.6 133 60.9
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 9.8e-36 154.1 107 72.9
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 1.7e-35 153.3 104 72.1
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 1.7e-35 153.3 133 56.4
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.7e-33 146.0 85 78.8
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 1.3e-32 143.7 132 62.9
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 3.9e-32 142.1 91 71.4
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.5e-31 139.4 78 82.1
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 1.6e-30 136.7 114 63.2
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.2e-28 130.6 66 97.0
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 3.8e-27 125.6 81 72.8
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 1.4e-26 123.6 136 46.3
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 1.7e-24 116.7 157 39.5
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 1.6e-22 110.2 112 53.6
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 2.0e-20 103.2 55 85.5
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 7.6e-20 101.3 83 66.3
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.1e-17 93.2 54 81.5
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 3.0e-16 89.4 58 72.4
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.1e-15 87.4 71 66.2
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.1e-15 87.4 71 66.2
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 1.5e-15 87.0 53 75.5
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.4e-12 75.9 53 67.9
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 8.4e-11 71.2 82 39.0
AUR62027077 Chenopodium quinoa HOM05D005570 ORTHO05D007368 6.2e-06 55.1 56 51.8


User provided reference genes

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