Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 1.6e-129 466.1 235 100.0
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 8.0e-129 463.8 235 99.1
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 4.4e-127 458.0 235 97.4
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 6.0e-116 421.0 226 92.0
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 1.1e-114 416.8 235 90.6
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 8.4e-110 400.6 226 88.5
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 1.3e-107 393.3 225 85.3
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 3.0e-107 392.1 225 84.0
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 3.9e-107 391.7 225 84.9
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 1.5e-106 389.8 225 84.0
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 2.5e-106 389.0 226 83.6
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 4.3e-106 388.3 225 83.1
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 5.6e-106 387.9 222 84.7
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 5.6e-106 387.9 225 84.0
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 2.1e-105 386.0 224 82.1
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 2.8e-105 385.6 225 84.0
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 3.6e-105 385.2 234 79.9
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 4.7e-105 384.8 221 85.5
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 8.1e-105 384.0 222 82.4
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.1e-104 383.6 225 82.7
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.1e-104 383.6 233 80.7
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.1e-104 383.6 225 82.7
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.8e-104 382.9 225 83.1
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 1.8e-104 382.9 226 81.9
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 2.4e-104 382.5 225 82.2
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 2.4e-104 382.5 224 81.2
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 2.4e-104 382.5 224 81.2
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 2.4e-104 382.5 225 82.2
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 2.4e-104 382.5 225 81.3
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 4.0e-104 381.7 224 80.8
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 4.0e-104 381.7 225 82.2
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 5.2e-104 381.3 224 82.1
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 5.2e-104 381.3 222 82.0
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 6.8e-104 380.9 240 78.3
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 1.2e-103 380.2 222 82.4
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.2e-103 380.2 225 82.2
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 1.2e-103 380.2 235 78.7
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 1.2e-103 380.2 225 80.0
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 1.2e-103 380.2 225 80.4
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.5e-103 379.8 226 80.5
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.5e-103 379.8 226 80.5
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 1.5e-103 379.8 225 82.7
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 3.4e-103 378.6 226 80.5
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.4e-103 378.6 226 80.5
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 3.4e-103 378.6 235 77.9
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 4.4e-103 378.3 222 82.4
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 5.8e-103 377.9 225 81.8
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 9.9e-103 377.1 226 80.1
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 9.9e-103 377.1 226 79.6
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 9.9e-103 377.1 225 81.8
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 1.7e-102 376.3 225 80.0
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 2.9e-102 375.6 225 81.8
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 2.9e-102 375.6 225 81.8
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 8.4e-102 374.0 225 80.9
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 1.9e-101 372.9 225 80.9
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 2.4e-101 372.5 237 78.9
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 5.4e-101 371.3 228 80.3
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 7.1e-101 370.9 224 80.4
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 7.1e-101 370.9 225 80.4
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 1.2e-100 370.2 221 79.6
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 2.1e-100 369.4 224 79.5
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.7e-100 369.0 230 78.3
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 3.5e-100 368.6 236 78.0
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 3.5e-100 368.6 225 80.4
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 4.6e-100 368.2 224 79.5
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 7.8e-100 367.5 235 75.7
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 1.7e-99 366.3 236 74.2
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.7e-99 366.3 240 75.4
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 2.3e-99 365.9 226 82.7
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.0e-99 365.5 220 79.5
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 3.0e-99 365.5 226 77.9
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 3.9e-99 365.2 226 78.3
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 6.6e-99 364.4 226 80.1
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 8.7e-99 364.0 225 78.7
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 1.1e-98 363.6 226 79.6
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 1.5e-98 363.2 234 74.4
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.3e-97 360.1 218 78.9
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 1.4e-96 356.7 226 75.2
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 1.4e-96 356.7 226 75.2
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.4e-96 356.7 226 73.9
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 1.4e-96 356.7 226 76.1
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 2.4e-96 355.9 214 80.4
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 3.1e-96 355.5 226 76.5
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 9.0e-96 354.0 226 76.5
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 9.0e-96 354.0 227 75.3
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 9.0e-96 354.0 226 75.2
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 1.5e-95 353.2 225 78.2
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 2.0e-95 352.8 227 74.9
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 2.0e-95 352.8 226 76.1
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 2.6e-95 352.4 227 75.3
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 3.4e-95 352.1 226 75.2
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 3.4e-95 352.1 225 76.0
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 3.4e-95 352.1 222 75.2
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 7.6e-95 350.9 226 73.5
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 7.6e-95 350.9 226 75.7
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 2.9e-94 349.0 228 75.9
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 4.9e-94 348.2 225 74.2
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 6.4e-94 347.8 226 73.5
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 8.4e-94 347.4 224 76.8
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 1.9e-93 346.3 224 76.8
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 1.9e-93 346.3 226 75.2
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 7.1e-93 344.4 218 76.1
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 1.2e-92 343.6 218 76.1
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 7.9e-92 340.9 226 73.9
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 8.7e-91 337.4 322 57.5
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.1e-90 337.0 223 71.7
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 1.5e-90 336.7 304 58.6
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 1.9e-90 336.3 225 70.7
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 4.3e-90 335.1 224 75.0
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 5.6e-90 334.7 252 66.3
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 1.4e-88 330.1 225 71.6
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 1.2e-87 327.0 222 68.5
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 2.0e-87 326.2 187 84.0
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 8.4e-86 320.9 218 74.8
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 9.3e-85 317.4 225 65.8
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 6.0e-84 314.7 225 64.9
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 6.7e-83 311.2 230 69.6
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 8.7e-83 310.8 226 67.7
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 7.4e-82 307.8 226 67.3
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 2.8e-81 305.8 192 76.0
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 2.0e-79 299.7 198 74.2
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 3.4e-79 298.9 187 74.9
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 8.4e-78 294.3 225 59.6
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.9e-74 283.1 189 73.0
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 2.7e-68 262.7 168 75.6
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 5.1e-67 258.5 197 65.0
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.9e-66 256.5 237 58.6
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 1.8e-64 250.0 163 75.5
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 5.9e-55 218.4 155 65.8
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 6.5e-54 214.9 218 50.5
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 3.3e-42 176.0 119 68.9
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 1.2e-36 157.5 101 74.3
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 2.8e-33 146.4 189 38.1
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 1.0e-27 127.9 96 70.8
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 2.6e-26 123.2 209 34.9
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 2.2e-09 67.0 45 64.4


User provided reference genes

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