Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 4.3e-44 181.0 97 100.0
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 9.6e-44 179.9 97 99.0
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 7.8e-38 160.2 101 90.1
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 8.1e-35 150.2 97 82.5
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 8.1e-35 150.2 99 81.8
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 4.0e-34 147.9 99 80.8
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 3.5e-30 134.8 100 74.0
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 2.3e-29 132.1 98 70.4
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 7.6e-25 117.1 101 64.4
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 6.4e-24 114.0 108 61.1
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 8.4e-24 113.6 96 60.4
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 2.7e-22 108.6 104 61.5
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.5e-20 102.8 96 61.5
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 1.9e-20 102.4 107 55.1
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 1.9e-20 102.4 109 56.9
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 1.6e-19 99.4 110 56.4
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 1.6e-19 99.4 99 58.6
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 2.8e-19 98.6 96 60.4
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 2.8e-19 98.6 91 61.5
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 1.4e-18 96.3 96 57.3
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 1.8e-18 95.9 98 56.1
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 3.1e-18 95.1 101 55.4
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 4.0e-18 94.7 98 57.1
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 6.9e-18 94.0 102 54.9
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 1.2e-17 93.2 98 54.1
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 1.2e-17 93.2 101 54.5
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 3.4e-17 91.7 96 55.2
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 4.5e-17 91.3 96 55.2
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 4.5e-17 91.3 99 53.5
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 5.8e-17 90.9 97 55.7
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 5.8e-17 90.9 97 57.7
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 1.0e-16 90.1 102 53.9
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.3e-16 89.7 100 52.0
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 4.9e-16 87.8 105 50.5
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 1.9e-15 85.9 97 50.5
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 4.2e-15 84.7 62 66.1
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 4.2e-15 84.7 96 49.0
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 7.1e-15 84.0 104 50.0
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 7.1e-15 84.0 101 51.5
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 9.3e-15 83.6 104 49.0
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 2.1e-14 82.4 98 50.0
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 4.6e-14 81.3 103 49.5
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 4.6e-14 81.3 103 51.5
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 6.0e-14 80.9 103 46.6
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 6.0e-14 80.9 60 61.7
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 6.0e-14 80.9 100 50.0
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 7.9e-14 80.5 103 46.6
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.0e-13 80.1 96 49.0
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 1.0e-13 80.1 101 47.5
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 1.0e-13 80.1 101 47.5
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 1.0e-13 80.1 106 49.1
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 1.0e-13 80.1 81 55.6
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 1.3e-13 79.7 101 47.5
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.3e-13 79.7 96 49.0
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 1.3e-13 79.7 97 52.6
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 1.3e-13 79.7 100 46.0
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 1.8e-13 79.3 103 48.5
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 2.3e-13 79.0 96 45.8
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 3.9e-13 78.2 61 62.3
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 5.1e-13 77.8 53 67.9
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 5.1e-13 77.8 55 67.3
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 6.7e-13 77.4 96 45.8
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 8.7e-13 77.0 82 53.7
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.5e-12 76.3 104 45.2
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.5e-12 76.3 104 45.2
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 1.5e-12 76.3 70 55.7
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.9e-12 75.9 62 59.7
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 2.5e-12 75.5 103 47.6
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 3.3e-12 75.1 102 42.2
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 3.3e-12 75.1 102 42.2
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.3e-12 74.7 103 43.7
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 4.3e-12 74.7 44 75.0
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 5.7e-12 74.3 85 50.6
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 5.7e-12 74.3 57 57.9
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 7.4e-12 73.9 53 66.0
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 9.7e-12 73.6 51 68.6
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 1.3e-11 73.2 58 56.9
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 2.2e-11 72.4 104 44.2
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 2.8e-11 72.0 58 55.2
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 2.8e-11 72.0 58 55.2
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 2.8e-11 72.0 110 41.8
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 4.8e-11 71.2 102 40.2
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 6.3e-11 70.9 84 47.6
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 1.1e-10 70.1 84 46.4
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 1.4e-10 69.7 96 43.8
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 1.8e-10 69.3 45 66.7
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 6.9e-10 67.4 42 71.4
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 9.0e-10 67.0 51 66.7
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 1.2e-09 66.6 41 73.2
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 2.6e-09 65.5 78 50.0
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 4.5e-09 64.7 91 41.8
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 7.6e-09 63.9 85 42.4
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 3.6e-06 55.1 102 36.3


User provided reference genes

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