Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g042280.4 Solanum lycopersicum HOM05D003432 ORTHO05D009615 8.5e-111 403.7 203 100.0
Sopen07g021910 Solanum pennellii HOM05D003432 ORTHO05D009615 1.1e-76 290.4 253 66.8
PGSC0003DMG400002390 Solanum tuberosum HOM05D003432 ORTHO05D009615 1.7e-71 273.1 256 64.5
Nitab4.5_0007773g0030 Nicotiana tabacum HOM05D003432 ORTHO05D009615 4.0e-68 261.9 260 60.4
Nitab4.5_0001565g0090 Nicotiana tabacum HOM05D003432 ORTHO05D009615 1.6e-64 250.0 260 58.5
Peaxi162Scf00776g00113 Petunia axillaris HOM05D003432 ORTHO05D009615 3.5e-64 248.8 198 68.2
CAN.G52.10 Capsicum annuum HOM05D003432 ORTHO05D009615 6.6e-63 244.6 260 58.5
CSS0004751 Camellia sinensis var. sinensis HOM05D003432 ORTHO05D009615 2.4e-49 199.5 244 48.4
CSS0032426 Camellia sinensis var. sinensis HOM05D003432 ORTHO05D009615 2.4e-49 199.5 244 48.4
Dinv42421 Davidia involucrata HOM05D003432 ORTHO05D009615 4.6e-48 195.3 256 48.0
Cc06_g12560 Coffea canephora HOM05D003432 ORTHO05D009615 5.1e-47 191.8 280 46.1
Ciclev10009188m.g Citrus clementina HOM05D003432 ORTHO05D009615 9.6e-46 187.6 250 46.0
Actinidia39631 Actinidia chinensis HOM05D003432 ORTHO05D009615 1.6e-45 186.8 291 41.2
Eucgr.C00779 Eucalyptus grandis HOM05D003432 ORTHO05D009615 6.2e-45 184.9 254 46.5
Atru.chr7.1749 Acer truncatum HOM05D003432 ORTHO05D009615 1.1e-44 184.1 246 45.5
GSVIVG01015033001 Vitis vinifera HOM05D003432 ORTHO05D009615 3.1e-44 182.6 249 45.0
PGR142G4000 Punica granatum HOM05D003432 ORTHO05D009615 9.0e-44 181.0 247 44.1
Duzib168G1658 Durio zibethinus HOM05D003432 ORTHO05D009615 1.2e-43 180.6 257 44.7
Nn8g38560 Nelumbo nucifera HOM05D003432 ORTHO05D009615 3.4e-43 179.1 262 45.4
vmacro17099 Vaccinium macrocarpon HOM05D003432 ORTHO05D009615 4.9e-42 175.3 214 48.1
Haze_26048 Corylus avellana HOM05D003432 ORTHO05D009615 1.1e-41 174.1 247 44.1
Rhsim05G0003900 Rhododendron simsii HOM05D000736 ORTHO05D009615 1.1e-41 174.1 219 45.7
Gorai.009G037200 Gossypium raimondii HOM05D003432 ORTHO05D009615 2.4e-41 172.9 255 44.7
COL.COLO4_21226 Corchorus olitorius HOM05D003432 ORTHO05D009615 3.2e-41 172.6 251 45.4
Lsat_1_v5_gn_7_35340 Lactuca sativa HOM05D003432 ORTHO05D009615 3.2e-41 172.6 253 42.3
Gohir.D05G036700 Gossypium hirsutum HOM05D003432 ORTHO05D009615 4.2e-41 172.2 255 44.7
Potri.006G138400 Populus trichocarpa HOM05D003432 ORTHO05D009615 4.2e-41 172.2 247 44.1
RcHm_v2.0_Chr2g0095521 Rosa chinensis HOM05D003432 ORTHO05D009615 5.5e-41 171.8 242 44.6
Sabra06G0108200 Salix brachista HOM05D003432 ORTHO05D009615 5.5e-41 171.8 248 44.0
TWI34G0487 Tripterygium wilfordii HOM05D003432 ORTHO05D009615 5.5e-41 171.8 252 43.7
Gohir.A05G035200 Gossypium hirsutum HOM05D003432 ORTHO05D009615 9.3e-41 171.0 257 43.6
CiPaw.03G202800 Carya illinoinensis HOM05D003432 ORTHO05D009615 2.1e-40 169.9 249 43.8
Lj4C918T5 Lonicera japonica HOM05D003432 ORTHO05D009615 2.1e-40 169.9 197 49.2
FAN26G2439 Fragaria x ananassa HOM05D003432 ORTHO05D009615 6.0e-40 168.3 244 41.8
FAN26G2501 Fragaria x ananassa HOM05D003432 ORTHO05D009615 6.0e-40 168.3 244 41.8
FAN28G1002 Fragaria x ananassa HOM05D003432 ORTHO05D009615 6.0e-40 168.3 244 41.8
FAN23G2743 Fragaria x ananassa HOM05D003432 ORTHO05D009615 7.9e-40 167.9 244 41.8
FvH4_1g09130 Fragaria vesca HOM05D003432 ORTHO05D009615 1.0e-39 167.5 244 41.8
FAN19G1389 Fragaria x ananassa HOM05D003432 ORTHO05D009615 1.0e-39 167.5 244 41.8
FAN26G1641 Fragaria x ananassa HOM05D003432 ORTHO05D009615 1.0e-39 167.5 244 41.8
FAN28G0794 Fragaria x ananassa HOM05D003432 ORTHO05D009615 2.3e-39 166.4 244 41.4
Sc08g0008990 Simmondsia chinensis HOM05D003432 ORTHO05D009615 3.0e-39 166.0 194 49.5
Prupe.7G194000 Prunus persica HOM05D003432 ORTHO05D009615 8.7e-39 164.5 242 42.1
TAR626G1143 Trochodendron aralioides HOM05D003432 ORTHO05D009615 1.1e-38 164.1 268 42.2
Cpa.g.sc261.4 Carica papaya HOM05D003432 ORTHO05D009615 1.5e-38 163.7 248 41.9
SalBow5G1662 Salvia bowleyana HOM05D003432 ORTHO05D009615 1.5e-38 163.7 291 42.3
TAR468G0013 Trochodendron aralioides HOM05D003432 ORTHO05D009615 2.5e-38 162.9 274 42.7
MSTRG.26491 Avicennia marina HOM05D003432 ORTHO05D009615 5.6e-38 161.8 253 40.3
Lalb_Chr11g0074061 Lupinus albus HOM05D003432 ORTHO05D009615 5.6e-38 161.8 248 42.7
QL11p001622 Quercus lobata HOM05D003432 ORTHO05D009615 5.6e-38 161.8 200 46.0
Oeu055337.3 Olea europaea HOM05D003432 ORTHO05D009615 1.3e-37 160.6 223 44.4
MD02G1096900 Malus domestica HOM05D003432 ORTHO05D009615 2.1e-37 159.8 245 41.2
Manes.03G043800 Manihot esculenta HOM05D003432 ORTHO05D009615 2.1e-37 159.8 251 41.4
Lj6g0008353 Lotus japonicus HOM05D003432 ORTHO05D009615 2.8e-37 159.5 240 42.1
VMungo1309G2248 Vigna mungo HOM05D003432 ORTHO05D009615 6.2e-37 158.3 239 41.8
MELO3C015545.2 Cucumis melo HOM05D003432 ORTHO05D009615 8.1e-37 157.9 247 41.3
Migut.L01588 Erythranthe guttata HOM05D003432 ORTHO05D009615 8.1e-37 157.9 262 39.3
AUR62028283 Chenopodium quinoa HOM05D003432 ORTHO05D009615 1.1e-36 157.5 254 43.7
Psat1g135440 Pisum sativum HOM05D003432 ORTHO05D009615 1.1e-36 157.5 242 43.4
Thecc.09G072100 Theobroma cacao HOM05D003432 ORTHO05D009615 1.1e-36 157.5 252 42.9
Ca_18397_v3 Cicer arietinum L. HOM05D003432 ORTHO05D009615 1.4e-36 157.1 240 42.5
MD15G1221700 Malus domestica HOM05D003432 ORTHO05D009615 1.4e-36 157.1 245 40.4
CDE05G1221 Ceratophyllum demersum HOM05D003432 ORTHO05D009615 1.8e-36 156.8 247 40.1
ClCG03G014820 Citrullus lanatus HOM05D002686 ORTHO05D003222 1.8e-36 156.8 247 41.7
CsaV3_1G041330 Cucumis sativus L. HOM05D003432 ORTHO05D009615 3.1e-36 156.0 247 41.3
Dinv25526 Davidia involucrata HOM05D003432 ORTHO05D009615 6.9e-36 154.8 163 54.0
Glyma.15G181300 Glycine max HOM05D003432 ORTHO05D009615 6.9e-36 154.8 243 41.6
Manes.16G091300 Manihot esculenta HOM05D003432 ORTHO05D009615 1.2e-35 154.1 248 42.7
EL10Ac8g19015 Beta vulgaris HOM05D003432 ORTHO05D009615 5.8e-35 151.8 219 45.2
AUR62025280 Chenopodium quinoa HOM05D003432 ORTHO05D009615 7.6e-35 151.4 217 44.2
MBI19_g29886_MAGBIO Magnolia biondii HOM05D003432 ORTHO05D009615 1.0e-34 151.0 263 39.9
Sed0019831 Sechium edule HOM05D003432 ORTHO05D009615 1.7e-34 150.2 247 39.7
Ah.14g084790 Amaranthus hybridus HOM05D003432 ORTHO05D009615 3.8e-34 149.1 253 39.9
QL11p001636 Quercus lobata HOM05D003432 ORTHO05D009615 4.2e-33 145.6 159 52.8
arahy.Tifrunner.gnm1.ann1.XGY8H1 Arachis hypogaea HOM05D003432 ORTHO05D009615 9.3e-33 144.4 246 38.2
TPR.G20644 Trifolium pratense HOM05D003432 ORTHO05D009615 9.3e-33 144.4 242 39.3
arahy.Tifrunner.gnm1.ann1.67NTJL Arachis hypogaea HOM05D003432 ORTHO05D009615 1.2e-32 144.1 246 38.6
HanXRQChr03g0060051 Helianthus annuus HOM05D003432 ORTHO05D009615 1.2e-32 144.1 246 39.8
ATR0681G122 Amborella trichopoda HOM05D003432 ORTHO05D009615 1.3e-31 140.6 198 42.9
Medtr2g043370 Medicago truncatula HOM05D003432 ORTHO05D009615 1.8e-31 140.2 251 39.0
Hma1.2p1_0179F.1_g079270 Hydrangea macrophylla HOM05D003432 ORTHO05D009615 6.7e-31 138.3 256 37.5
PSO421G0180 Papaver somniferum HOM05D003432 ORTHO05D009615 1.5e-30 137.1 249 38.2
Phvul.009G224600 Phaseolus vulgaris HOM05D003432 ORTHO05D009615 1.5e-30 137.1 154 50.0
SGA_v2.0_scaffold21G09538 Striga asiatica HOM05D003432 ORTHO05D009615 2.5e-30 136.3 296 33.8
unitig_746.g26793 Utricularia gibba HOM05D003432 ORTHO05D009615 2.8e-29 132.9 253 35.6
Hund08851 Selenicereus undatus HOM05D003432 ORTHO05D009615 2.4e-28 129.8 155 47.7
Zm00001eb029380 Zea mays HOM05D003432 ORTHO05D009615 1.5e-22 110.5 248 33.5
Actinidia30247 Actinidia chinensis HOM05D003432 ORTHO05D009615 7.4e-22 108.2 73 71.2
Os12g0573000 Oryza sativa ssp. japonica HOM05D003432 ORTHO05D009615 1.2e-19 100.9 142 40.8
ECA240G2858 Erigeron canadensis HOM05D003432 ORTHO05D009615 3.4e-19 99.4 148 44.6
PSO104G0279 Papaver somniferum HOM05D003432 ORTHO05D009615 1.1e-17 94.4 149 39.6
SEGI_12213 Sequoiadendron giganteum HOM05D003432 ORTHO05D009615 1.1e-17 94.4 153 36.6
Mapoly0052s0131 Marchantia polymorpha HOM05D003432 ORTHO05D009615 2.7e-16 89.7 152 38.2
SMO244G0097 Selaginella moellendorffii HOM05D003432 ORTHO05D009615 3.9e-15 85.9 151 36.4
AagrBONN_evm.TU.Sc2ySwM_228.4870 Anthoceros agrestis HOM05D003432 ORTHO05D009615 3.3e-14 82.8 152 32.9
MBI19_g18110_MAGBIO Magnolia biondii HOM05D003432 ORTHO05D009615 1.7e-13 80.5 144 37.5
PGR042G2329 Punica granatum HOM05D003432 ORTHO05D009553 1.1e-12 77.8 163 33.7
FAN01G0987 Fragaria x ananassa HOM05D003432 ORTHO05D009553 9.1e-12 74.7 193 29.5
FvH4_7g13540 Fragaria vesca HOM05D003432 ORTHO05D009553 1.5e-11 73.9 193 29.5
FAN06G2249 Fragaria x ananassa HOM05D003432 ORTHO05D009553 1.5e-11 73.9 193 29.5
FAN06G3453 Fragaria x ananassa HOM05D003432 ORTHO05D009553 1.5e-11 73.9 193 29.5
SEGI_12179 Sequoiadendron giganteum HOM05D003432 ORTHO05D009553 1.5e-11 73.9 148 30.4
FAN15G2253 Fragaria x ananassa HOM05D003432 ORTHO05D208803 2.6e-11 73.2 121 40.5
FAN03G0726 Fragaria x ananassa HOM05D003432 ORTHO05D009553 3.4e-11 72.8 152 29.6
FAN10G1796 Fragaria x ananassa HOM05D003432 ORTHO05D009553 5.9e-11 72.0 193 29.0
Thecc.01G365400 Theobroma cacao HOM05D003432 ORTHO05D009553 1.0e-10 71.2 148 31.1
Glyma.09G263200 Glycine max HOM05D003432 ORTHO05D009553 1.3e-10 70.9 238 26.5
Potri.014G079500 Populus trichocarpa HOM05D003432 ORTHO05D009553 1.7e-10 70.5 159 32.7
CDE05G1977 Ceratophyllum demersum HOM05D003432 ORTHO05D009553 2.2e-10 70.1 152 32.9
Oeu053293.1 Olea europaea HOM05D003432 ORTHO05D009553 2.2e-10 70.1 161 31.7
Potri.002G155700 Populus trichocarpa HOM05D003432 ORTHO05D009553 2.2e-10 70.1 159 31.4
TWI59G0087 Tripterygium wilfordii HOM05D003432 ORTHO05D009553 2.2e-10 70.1 122 36.1
Glyma.18G229000 Glycine max HOM05D003432 ORTHO05D009553 3.8e-10 69.3 238 26.5
Sabra02G0123800 Salix brachista HOM05D003432 ORTHO05D009553 3.8e-10 69.3 159 32.1
RcHm_v2.0_Chr1g0353101 Rosa chinensis HOM05D003432 ORTHO05D009553 5.0e-10 68.9 237 26.2
Peaxi162Scf00397g00522 Petunia axillaris HOM05D003432 ORTHO05D009553 1.1e-09 67.8 152 29.6
MD01G1048500 Malus domestica HOM05D003432 ORTHO05D009553 1.4e-09 67.4 150 30.0
Cc02_g37450 Coffea canephora HOM05D003432 ORTHO05D009553 2.5e-09 66.6 166 32.5
Haze_15199 Corylus avellana HOM05D003432 ORTHO05D009553 2.5e-09 66.6 152 28.9
Duzib268G1484 Durio zibethinus HOM05D003432 ORTHO05D009553 2.5e-09 66.6 161 28.6
Glyma.19G039400 Glycine max HOM05D003432 ORTHO05D009553 2.5e-09 66.6 160 28.8
Cfa004211 Carpinus fangiana HOM05D003432 ORTHO05D009553 3.2e-09 66.2 152 28.3
FAN10G2212 Fragaria x ananassa HOM05D003432 ORTHO05D009553 3.2e-09 66.2 193 27.5
Ca_07881_v3 Cicer arietinum L. HOM05D003432 ORTHO05D009553 4.2e-09 65.9 172 27.9
Lj1g0020563 Lotus japonicus HOM05D003432 ORTHO05D009553 4.2e-09 65.9 152 28.9
Nitab4.5_0001251g0050 Nicotiana tabacum HOM05D003432 ORTHO05D009553 5.5e-09 65.5 81 40.7
Oeu056346.1 Olea europaea HOM05D003432 ORTHO05D009553 5.5e-09 65.5 148 29.7
QL08p049983 Quercus lobata HOM05D003432 ORTHO05D009553 5.5e-09 65.5 152 29.6
VMungo1383G3405 Vigna mungo HOM05D003432 ORTHO05D009553 5.5e-09 65.5 247 27.5
CiPaw.02G027500 Carya illinoinensis HOM05D003432 ORTHO05D009553 7.2e-09 65.1 152 28.3
EL10Ac1g00520 Beta vulgaris HOM05D003432 ORTHO05D009553 9.4e-09 64.7 223 25.6
Cpa.g.sc37.45 Carica papaya HOM05D003432 ORTHO05D009553 9.4e-09 64.7 150 28.7
COL.COLO4_12600 Corchorus olitorius HOM05D003432 ORTHO05D009553 9.4e-09 64.7 148 28.4
GSVIVG01026819001 Vitis vinifera HOM05D003432 ORTHO05D009553 9.4e-09 64.7 196 26.0
arahy.Tifrunner.gnm1.ann1.AIRX6Z Arachis hypogaea HOM05D003432 ORTHO05D009553 1.2e-08 64.3 150 30.0
arahy.Tifrunner.gnm1.ann1.YEH8SC Arachis hypogaea HOM05D003432 ORTHO05D009553 1.2e-08 64.3 150 30.0
Prupe.2G159500 Prunus persica HOM05D003432 ORTHO05D009553 1.6e-08 63.9 240 25.4
TPR.G17601 Trifolium pratense HOM05D003432 ORTHO05D009553 1.6e-08 63.9 200 28.0
MSTRG.4870 Avicennia marina HOM05D003432 ORTHO05D009553 2.1e-08 63.5 150 28.7
MELO3C022534.2 Cucumis melo HOM05D003432 ORTHO05D009553 2.1e-08 63.5 170 31.2
CsaV3_6G005770 Cucumis sativus L. HOM05D003432 ORTHO05D009553 2.1e-08 63.5 169 30.8
Lalb_Chr01g0021091 Lupinus albus HOM05D003432 ORTHO05D009553 2.1e-08 63.5 159 29.6
Nitab4.5_0006669g0010 Nicotiana tabacum HOM05D003432 ORTHO05D009553 2.1e-08 63.5 74 41.9
PSO782G0809 Papaver somniferum HOM05D003432 ORTHO05D009553 2.1e-08 63.5 222 27.5
PSO782G1297 Papaver somniferum HOM05D003432 ORTHO05D009553 2.1e-08 63.5 222 27.5
PSO782G4791 Papaver somniferum HOM05D003432 ORTHO05D009553 2.1e-08 63.5 222 27.5
Phvul.008G069000 Phaseolus vulgaris HOM05D003432 ORTHO05D009553 2.1e-08 63.5 237 27.0
Manes.01G260500 Manihot esculenta HOM05D003432 ORTHO05D009553 2.7e-08 63.2 230 25.2
Sopen01g037980 Solanum pennellii HOM05D003432 ORTHO05D009553 2.7e-08 63.2 81 40.7
PGSC0003DMG401000019 Solanum tuberosum HOM05D003432 ORTHO05D009553 2.7e-08 63.2 152 27.6
Ciclev10021526m.g Citrus clementina HOM05D003432 ORTHO05D009553 3.6e-08 62.8 150 26.7
Solyc01g094180.4 Solanum lycopersicum HOM05D003432 ORTHO05D009553 3.6e-08 62.8 81 40.7
CAN.G78.16 Capsicum annuum HOM05D003432 ORTHO05D009553 4.7e-08 62.4 74 40.5
Migut.B01709 Erythranthe guttata HOM05D003432 ORTHO05D009553 4.7e-08 62.4 148 30.4
AUR62022760 Chenopodium quinoa HOM05D003432 ORTHO05D009553 6.1e-08 62.0 150 26.0
Duzib138G1165 Durio zibethinus HOM05D003432 ORTHO05D009553 6.1e-08 62.0 148 27.7
CANSAT56G1745 Cannabis sativa HOM05D003432 ORTHO05D009553 7.9e-08 61.6 150 28.0
Eucgr.E00188 Eucalyptus grandis HOM05D003432 ORTHO05D009553 7.9e-08 61.6 155 28.4
Sed0022298 Sechium edule HOM05D003432 ORTHO05D009553 7.9e-08 61.6 164 29.3
ATR0680G243 Amborella trichopoda HOM05D003432 ORTHO05D009553 1.0e-07 61.2 149 29.5
Nn1g01421 Nelumbo nucifera HOM05D003432 ORTHO05D009553 1.4e-07 60.8 150 26.0
PSO478G4595 Papaver somniferum HOM05D003432 ORTHO05D009553 1.4e-07 60.8 160 29.4
Psat3g111800 Pisum sativum HOM05D003432 ORTHO05D009553 1.4e-07 60.8 156 27.6
AUR62004309 Chenopodium quinoa HOM05D003432 ORTHO05D009553 1.8e-07 60.5 150 27.3
Hma1.2p1_0001F.1_g001730 Hydrangea macrophylla HOM05D003432 ORTHO05D009553 1.8e-07 60.5 81 39.5
CSS0000636 Camellia sinensis var. sinensis HOM05D003432 ORTHO05D009553 2.3e-07 60.1 152 26.3
MBI18_g45104_MAGBIO Magnolia biondii HOM05D003432 ORTHO05D009553 2.3e-07 60.1 70 38.6
SHI06917 Sapria himalayana HOM05D003432 ORTHO05D009553 2.3e-07 60.1 154 31.2
TAR629G1659 Trochodendron aralioides HOM05D003432 ORTHO05D009553 2.3e-07 60.1 81 38.3
Gohir.A11G086700 Gossypium hirsutum HOM05D003432 ORTHO05D009553 3.0e-07 59.7 77 37.7
Gohir.D11G090900 Gossypium hirsutum HOM05D003432 ORTHO05D009553 3.0e-07 59.7 77 37.7
Gorai.007G096900 Gossypium raimondii HOM05D003432 ORTHO05D009553 3.0e-07 59.7 77 37.7
Medtr7g076600 Medicago truncatula HOM05D003432 ORTHO05D009553 3.0e-07 59.7 196 27.6
Rhsim07G0019000 Rhododendron simsii HOM05D003432 ORTHO05D009553 5.1e-07 58.9 152 25.0
Atru.chr5.440 Acer truncatum HOM05D003432 ORTHO05D009553 6.7e-07 58.5 171 25.1
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 8.8e-07 58.2 78 39.7
Sc02g0002140 Simmondsia chinensis HOM05D003432 ORTHO05D009553 1.1e-06 57.8 74 40.5
VMungo1383G0671 Vigna mungo HOM05D003432 ORTHO05D009553 1.1e-06 57.8 166 30.1
unitig_22.g6807 Utricularia gibba HOM05D003432 ORTHO05D009553 1.5e-06 57.4 165 24.2
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.3e-06 56.2 75 40.0
Actinidia38307 Actinidia chinensis HOM05D003432 ORTHO05D009553 4.4e-06 55.8 190 24.2
Dinv43778 Davidia involucrata HOM05D003432 ORTHO05D009553 4.4e-06 55.8 81 35.8
FAN24G2380 Fragaria x ananassa HOM05D003432 ORTHO05D046199 4.4e-06 55.8 60 51.7


User provided reference genes

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