Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 1.3e-171 606.3 310 100.0
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 1.3e-166 589.7 310 96.8
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 1.8e-160 569.3 310 94.2
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.5e-138 496.5 311 84.2
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.7e-131 473.0 312 81.4
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 5.1e-131 471.5 312 80.4
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 9.9e-119 430.6 312 76.0
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.2e-103 380.6 311 65.3
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 5.0e-102 375.2 310 66.1
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.9e-101 373.2 314 64.3
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.8e-99 366.7 311 64.0
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 3.0e-99 365.9 220 80.9
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 5.1e-99 365.2 311 63.0
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 6.7e-99 364.8 316 63.3
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 5.7e-98 361.7 310 64.8
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 9.7e-98 360.9 316 63.0
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 4.8e-97 358.6 265 69.1
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 3.1e-96 355.9 313 61.3
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 4.1e-96 355.5 243 73.3
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 9.1e-96 354.4 314 63.1
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 9.1e-96 354.4 271 67.2
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.5e-95 353.6 316 62.0
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 1.5e-95 353.6 312 61.5
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.0e-95 353.2 314 62.4
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 2.6e-95 352.8 313 62.9
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 5.9e-95 351.7 313 62.0
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 5.9e-95 351.7 313 61.7
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 2.9e-94 349.4 323 61.0
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 6.5e-94 348.2 325 61.5
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 6.5e-94 348.2 223 77.6
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 1.1e-93 347.4 317 60.9
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 1.1e-93 347.4 307 61.9
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 1.1e-93 347.4 308 62.0
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 1.1e-93 347.4 308 61.7
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 1.9e-93 346.7 326 57.7
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 2.5e-93 346.3 313 61.0
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 2.5e-93 346.3 325 60.6
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.2e-93 345.9 258 68.6
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 3.2e-93 345.9 279 66.7
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 4.2e-93 345.5 318 60.7
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 5.5e-93 345.1 306 61.8
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 1.2e-92 344.0 316 60.8
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 1.6e-92 343.6 307 61.2
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 1.6e-92 343.6 258 68.2
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 1.6e-92 343.6 342 59.1
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 2.1e-92 343.2 309 59.2
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.1e-92 343.2 253 69.6
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 2.7e-92 342.8 274 66.1
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 2.7e-92 342.8 311 58.8
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 3.6e-92 342.4 313 60.1
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 4.7e-92 342.0 314 60.8
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 6.1e-92 341.7 306 60.1
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 7.9e-92 341.3 253 69.2
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.4e-91 340.5 315 60.3
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 2.3e-91 339.7 307 60.9
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 2.3e-91 339.7 217 74.7
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 5.1e-91 338.6 306 60.1
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 6.7e-91 338.2 307 61.9
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 6.7e-91 338.2 257 69.3
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 8.8e-91 337.8 307 60.9
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 1.1e-90 337.4 308 59.7
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.0e-90 336.7 312 60.6
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 2.6e-90 336.3 319 59.2
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 3.3e-90 335.9 311 59.5
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 5.7e-90 335.1 311 59.8
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 5.7e-90 335.1 307 59.9
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 7.4e-90 334.7 317 56.8
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 7.4e-90 334.7 308 60.7
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 7.4e-90 334.7 308 60.7
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 2.2e-89 333.2 216 74.1
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 2.8e-89 332.8 307 59.0
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 3.7e-89 332.4 311 59.2
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 4.8e-89 332.0 197 81.7
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 6.3e-89 331.6 240 70.0
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 1.8e-88 330.1 307 58.3
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 1.8e-88 330.1 311 59.8
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 1.8e-88 330.1 311 56.6
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.8e-88 330.1 312 59.0
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 2.4e-88 329.7 306 58.8
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 3.1e-88 329.3 313 56.5
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 5.3e-88 328.6 290 62.1
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 9.1e-88 327.8 311 58.2
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 1.2e-87 327.4 312 58.0
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 2.6e-87 326.2 231 70.1
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 4.5e-87 325.5 313 56.5
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.3e-86 323.9 254 65.7
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 1.7e-86 323.6 309 57.9
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 2.2e-86 323.2 315 58.4
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 3.8e-86 322.4 215 72.6
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 5.0e-86 322.0 345 53.0
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 6.5e-86 321.6 319 55.8
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 8.5e-86 321.2 258 65.5
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 1.1e-85 320.9 330 54.8
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 1.4e-85 320.5 307 59.3
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.5e-85 319.7 307 59.3
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 9.4e-85 317.8 227 67.8
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 2.1e-84 316.6 228 69.3
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 1.0e-83 314.3 296 58.8
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.4e-83 313.9 195 77.4
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.8e-83 313.5 227 70.9
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 3.9e-83 312.4 214 71.5
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.6e-82 309.7 302 57.6
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 5.7e-82 308.5 245 61.2
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 2.8e-81 306.2 207 72.5
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 1.1e-80 304.3 275 57.1
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 1.8e-80 303.5 315 56.2
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 9.1e-80 301.2 308 55.8
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 7.7e-79 298.1 293 56.7
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 1.6e-76 290.4 256 61.3
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 5.7e-74 282.0 232 60.3
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 1.7e-70 270.4 229 57.2
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 4.7e-68 262.3 272 54.0
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 8.3e-65 251.5 244 52.9
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 1.1e-64 251.1 258 54.7
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 4.5e-63 245.7 203 62.1
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 1.3e-62 244.2 232 52.6
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 3.8e-62 242.7 178 68.5
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 8.0e-60 235.0 191 64.4
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 8.0e-60 235.0 330 46.7
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 3.0e-46 189.9 167 55.1
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 5.6e-45 185.7 109 80.7
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 3.5e-39 166.4 144 57.6
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 1.7e-38 164.1 168 49.4
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 5.0e-38 162.5 282 40.8
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 5.8e-34 149.1 83 80.7
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 7.5e-34 148.7 83 81.9
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 2.1e-31 140.6 207 38.2
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 3.9e-30 136.3 135 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 5.6e-29 132.5 125 52.8
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.2e-28 131.3 83 73.5
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 4.0e-27 126.3 68 83.8
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 5.8e-26 122.5 150 38.7
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 4.1e-24 116.3 198 33.3
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.1e-19 101.7 151 46.4
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 5.2e-19 99.4 149 45.6
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 3.2e-16 90.1 57 70.2
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.8e-12 77.0 147 40.1
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 6.2e-12 75.9 83 50.6
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 3.8e-09 66.6 37 86.5
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.1e-08 65.1 166 32.5
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 2.4e-08 63.9 84 47.6
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 4.2e-08 63.2 35 85.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 7.1e-08 62.4 31 83.9
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 5.1e-06 56.2 28 82.1


User provided reference genes

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