Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 9.8e-78 293.9 148 100.0
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 9.9e-54 214.2 129 79.8
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 2.4e-47 193.0 93 98.9
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.1e-44 184.1 127 70.1
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 5.4e-44 181.8 156 67.9
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 6.0e-43 178.3 132 68.2
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.0e-42 177.6 126 69.8
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.3e-42 177.2 122 70.5
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 6.7e-42 174.9 145 62.1
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 6.7e-42 174.9 145 62.1
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 8.7e-42 174.5 105 82.9
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 1.1e-41 174.1 130 67.7
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.5e-41 173.7 138 64.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 1.5e-41 173.7 125 68.0
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.9e-41 173.3 119 69.7
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.9e-41 173.3 128 68.8
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 7.4e-41 171.4 122 70.5
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 9.6e-41 171.0 122 68.9
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 9.6e-41 171.0 151 60.9
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 9.6e-41 171.0 126 69.0
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.3e-40 170.6 147 61.2
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.8e-40 169.5 119 68.9
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.4e-39 167.2 137 62.0
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.4e-39 167.2 121 67.8
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.1e-39 166.0 125 64.8
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 5.3e-39 165.2 123 68.3
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 5.3e-39 165.2 130 63.8
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 9.0e-39 164.5 130 63.8
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-38 164.1 122 65.6
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-38 164.1 122 65.6
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.5e-38 163.7 102 73.5
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 2.0e-38 163.3 102 71.6
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.6e-38 162.9 123 64.2
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 4.5e-38 162.2 131 60.3
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.0e-37 161.0 125 65.6
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 2.2e-37 159.8 152 61.2
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.9e-37 159.5 102 72.5
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.9e-37 159.5 154 55.8
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.1e-36 157.5 130 62.3
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 2.5e-36 156.4 120 65.0
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.5e-36 156.4 124 64.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 7.1e-36 154.8 128 64.1
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 9.3e-36 154.5 101 68.3
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 2.1e-35 153.3 115 67.0
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.5e-35 152.5 128 64.1
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.5e-35 152.5 126 60.3
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.0e-34 151.0 123 63.4
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.3e-34 150.6 124 62.9
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 3.0e-34 149.4 121 62.0
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 6.7e-34 148.3 115 66.1
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.1e-33 147.5 120 65.8
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.1e-33 147.5 106 63.2
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.9e-33 146.7 94 72.3
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.3e-33 146.0 106 67.0
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.3e-33 146.0 147 59.2
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 9.6e-33 144.4 120 62.5
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 9.6e-33 144.4 122 61.5
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 9.6e-33 144.4 92 75.0
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 2.8e-32 142.9 115 60.9
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 2.8e-32 142.9 131 55.7
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 3.7e-32 142.5 122 59.8
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 4.8e-32 142.1 134 56.7
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 4.8e-32 142.1 91 71.4
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 6.2e-32 141.7 86 75.6
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 8.2e-32 141.4 107 68.2
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.1e-31 141.0 124 61.3
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.4e-31 140.6 122 60.7
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.4e-31 139.8 121 58.7
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.1e-31 139.4 131 58.0
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.1e-31 139.4 125 58.4
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 5.3e-31 138.7 92 70.7
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 5.3e-31 138.7 90 71.1
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 6.9e-31 138.3 115 63.5
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 6.9e-31 138.3 149 53.0
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 9.0e-31 137.9 78 83.3
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-30 137.5 125 58.4
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 2.0e-30 136.7 111 63.1
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 2.0e-30 136.7 111 64.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 2.0e-30 136.7 121 57.9
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 2.0e-30 136.7 121 57.9
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 3.4e-30 136.0 118 60.2
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 3.4e-30 136.0 118 60.2
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.8e-30 135.2 98 69.4
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 5.8e-30 135.2 128 55.5
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.8e-30 135.2 87 73.6
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.0e-29 134.4 99 67.7
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.9e-29 132.9 88 69.3
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 2.5e-28 129.8 112 56.2
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 4.2e-28 129.0 120 56.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 4.2e-28 129.0 120 56.7
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.1e-27 126.7 128 55.5
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 2.7e-27 126.3 89 65.2
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.0e-26 124.4 76 78.9
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.3e-26 124.0 127 54.3
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.3e-26 123.2 84 72.6
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.3e-26 123.2 127 55.1
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.1e-25 120.9 84 66.7
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 3.3e-25 119.4 115 56.5
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 5.7e-25 118.6 77 70.1
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 5.7e-25 118.6 108 58.3
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 5.7e-25 118.6 128 51.6
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.1e-23 114.4 139 48.2
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 2.4e-23 113.2 106 55.7
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 5.3e-23 112.1 89 61.8
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 5.3e-23 112.1 120 50.8
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.2e-22 110.9 89 60.7
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.2e-22 110.9 118 51.7
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.5e-22 110.5 72 73.6
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 7.7e-22 108.2 98 62.2
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.0e-21 107.8 64 76.6
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.3e-21 107.5 144 44.4
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.4e-20 104.0 58 84.5
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.4e-20 104.0 74 68.9
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 2.5e-20 103.2 69 69.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.5e-20 103.2 61 78.7
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 9.4e-20 101.3 140 47.1
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.6e-19 99.4 132 47.7
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 3.6e-19 99.4 91 59.3
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.6e-19 99.0 57 82.5
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.0e-18 97.8 101 51.5
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.8e-18 97.1 96 52.1
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 1.8e-18 97.1 96 52.1
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 2.0e-17 93.6 125 44.8
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 3.3e-17 92.8 85 54.1
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 4.3e-17 92.4 119 48.7
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 4.3e-17 92.4 82 58.5
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 7.4e-17 91.7 134 39.6
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 7.4e-17 91.7 61 75.4
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 9.7e-17 91.3 71 64.8
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.8e-16 89.7 115 46.1
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 6.3e-16 88.6 60 68.3
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 1.1e-15 87.8 125 47.2
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.1e-15 87.8 94 50.0
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.8e-15 87.0 53 84.9
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 5.3e-15 85.5 105 48.6
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.0e-14 83.6 55 78.2
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.6e-14 83.2 77 49.4
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 2.6e-14 83.2 70 62.9
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 4.5e-14 82.4 136 45.6
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 5.9e-14 82.0 85 50.6
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 7.7e-14 81.6 73 60.3
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.3e-13 80.9 60 65.0
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.3e-13 80.9 69 59.4
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 3.8e-13 79.3 47 80.9
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 8.5e-13 78.2 66 57.6
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.9e-12 77.0 44 79.5
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.5e-12 76.6 129 42.6
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.5e-12 76.6 46 82.6
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 4.2e-12 75.9 87 47.1
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 4.2e-12 75.9 40 85.0
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.6e-11 73.9 128 44.5
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.1e-11 73.6 43 81.4
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 2.1e-11 73.6 65 56.9
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 2.7e-11 73.2 52 69.2
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.6e-11 72.8 39 87.2
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 4.7e-11 72.4 42 78.6
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 4.7e-11 72.4 42 81.0
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 6.1e-11 72.0 121 40.5
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 1.8e-10 70.5 37 89.2
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.9e-10 69.3 92 41.3
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 5.1e-10 68.9 37 86.5
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 5.1e-10 68.9 145 39.3
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 5.1e-10 68.9 79 49.4
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 6.7e-10 68.6 126 42.1
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.5e-09 67.4 52 65.4
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 5.7e-09 65.5 46 65.2
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 7.4e-09 65.1 68 54.4
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 7.0e-07 58.5 91 34.1
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 7.0e-07 58.5 78 43.6
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 1.2e-06 57.8 74 43.2
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.5e-06 57.4 37 73.0
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.6e-06 56.6 51 56.9
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 7.7e-06 55.1 27 92.6


User provided reference genes

Program Settings