Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.1e-108 395.6 185 100.0
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 6.8e-107 390.6 185 99.5
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 4.6e-103 377.9 185 96.2
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 2.4e-96 355.5 185 89.2
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 1.3e-94 349.7 187 87.2
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.8e-91 339.3 207 79.2
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 4.0e-91 338.2 179 86.0
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.4e-88 329.7 179 83.2
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.4e-88 329.7 179 83.2
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.4e-88 329.7 179 83.8
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.1e-87 325.9 183 82.0
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.1e-87 325.9 183 82.0
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.0e-86 323.6 177 83.1
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 2.3e-86 322.4 179 79.9
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 2.3e-86 322.4 179 80.4
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 3.0e-86 322.0 179 81.6
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 5.1e-86 321.2 178 81.5
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 6.6e-86 320.9 179 78.8
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.1e-85 320.1 177 83.1
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-85 320.1 178 80.3
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 2.5e-85 318.9 177 82.5
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 2.5e-85 318.9 177 82.5
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 2.5e-85 318.9 179 79.9
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 2.5e-85 318.9 185 79.5
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 2.5e-85 318.9 175 81.7
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 3.3e-85 318.5 179 79.9
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 3.3e-85 318.5 179 79.9
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 4.3e-85 318.2 180 80.0
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 5.6e-85 317.8 175 81.7
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 5.6e-85 317.8 183 78.7
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.3e-85 317.4 178 79.8
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.3e-85 317.4 178 80.3
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 7.3e-85 317.4 173 82.7
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 9.6e-85 317.0 183 78.7
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 9.6e-85 317.0 179 82.7
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 9.6e-85 317.0 178 79.8
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 1.6e-84 316.2 181 79.0
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 1.6e-84 316.2 175 81.1
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 2.8e-84 315.5 175 77.7
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.8e-84 315.5 175 80.6
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.8e-84 315.5 175 80.6
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 2.8e-84 315.5 194 75.3
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.8e-84 315.5 178 79.2
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 3.6e-84 315.1 179 79.3
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 4.7e-84 314.7 180 80.0
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.7e-84 314.7 178 79.2
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 6.2e-84 314.3 180 78.3
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 6.2e-84 314.3 178 78.7
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 6.2e-84 314.3 176 79.0
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 8.1e-84 313.9 181 78.5
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 8.1e-84 313.9 183 75.4
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 1.4e-83 313.2 173 79.2
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 1.8e-83 312.8 179 78.8
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 1.8e-83 312.8 175 79.4
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.8e-83 312.8 194 75.8
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.8e-83 312.8 178 79.8
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 2.4e-83 312.4 175 79.4
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 2.4e-83 312.4 187 74.3
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 2.4e-83 312.4 177 80.8
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 3.1e-83 312.0 183 76.0
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 3.1e-83 312.0 179 76.0
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 5.2e-83 311.2 184 77.2
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 8.9e-83 310.5 183 75.4
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 8.9e-83 310.5 175 78.9
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 8.9e-83 310.5 175 78.9
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.2e-82 310.1 180 78.3
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.2e-82 310.1 180 78.3
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 2.0e-82 309.3 176 78.4
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 2.0e-82 309.3 177 79.7
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.6e-82 308.9 175 78.3
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.6e-82 308.9 175 78.3
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 2.6e-82 308.9 178 76.4
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 3.4e-82 308.5 177 79.1
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 4.4e-82 308.1 181 77.3
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.6e-82 307.4 178 76.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.3e-81 306.6 180 77.2
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.3e-81 306.6 187 73.8
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 1.7e-81 306.2 183 74.3
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 2.2e-81 305.8 183 77.0
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 8.4e-81 303.9 211 69.2
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 1.9e-80 302.8 177 77.4
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.4e-80 302.4 184 75.5
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 7.1e-80 300.8 165 83.0
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 3.5e-79 298.5 175 74.3
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 4.6e-79 298.1 183 74.9
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 3.0e-78 295.4 179 74.3
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 3.0e-78 295.4 179 74.3
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 3.0e-78 295.4 178 73.0
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.9e-78 295.0 175 73.7
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.9e-78 295.0 175 73.7
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.3e-76 290.0 159 82.4
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.8e-76 288.9 157 84.1
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.2e-76 287.7 161 81.4
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 1.4e-75 286.6 153 83.7
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.4e-75 286.6 188 71.8
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.3e-75 284.6 196 65.8
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 4.5e-74 281.6 177 74.0
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 7.6e-74 280.8 154 82.5
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.9e-73 278.9 176 73.3
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.9e-73 278.9 176 73.3
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 8.4e-73 277.3 177 71.8
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.9e-72 276.2 162 77.8
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.2e-72 275.4 154 83.8
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.4e-72 274.6 217 59.4
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 7.1e-72 274.2 217 59.0
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 3.5e-71 271.9 186 72.0
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 6.0e-71 271.2 168 75.6
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 2.5e-69 265.8 184 66.8
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 3.3e-69 265.4 153 77.8
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 9.6e-69 263.8 148 78.4
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 9.6e-69 263.8 175 68.0
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 9.6e-69 263.8 276 52.9
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.2e-66 256.9 183 66.1
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.7e-65 253.1 200 61.0
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 2.2e-65 252.7 183 66.7
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 6.4e-65 251.1 149 73.2
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 5.1e-62 241.5 185 62.7
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 2.5e-61 239.2 145 71.7
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 4.0e-59 231.9 180 56.1
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.2e-58 230.3 137 73.0
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 7.1e-56 221.1 179 57.0
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 2.7e-55 219.2 186 62.4
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.5e-55 218.8 117 83.8
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 5.7e-53 211.5 176 58.5
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.3e-52 210.3 194 61.9
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.3e-52 210.3 140 66.4
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 1.7e-49 199.9 200 51.5
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.2e-47 193.7 93 94.6
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 3.0e-46 189.1 189 47.1
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.5e-45 186.8 171 45.6
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.5e-45 186.8 171 45.6
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.5e-42 176.8 209 38.8
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.5e-41 171.4 87 87.4
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 2.5e-40 169.5 119 63.9
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.2e-40 168.7 140 57.9
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.7e-39 166.0 170 42.9
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.7e-36 155.6 146 56.2
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 3.7e-36 155.6 178 38.8
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 8.2e-36 154.5 160 48.1
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 7.7e-34 147.9 142 45.1
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 5.5e-32 141.7 93 66.7
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.9e-24 116.7 87 59.8
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 6.3e-12 75.1 70 50.0
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 1.6e-10 70.5 43 67.4


User provided reference genes

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