Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 0.0e+00 1831.6 941 100.0
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 0.0e+00 1481.1 934 83.8
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 0.0e+00 1456.4 770 97.1
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 0.0e+00 1287.7 944 73.5
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 0.0e+00 1269.6 931 72.9
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 0.0e+00 1269.6 907 76.1
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 0.0e+00 1131.3 930 67.4
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 0.0e+00 1120.9 802 76.7
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 2.0e-130 471.1 966 36.0
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 4.6e-127 459.9 877 39.5
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.5e-114 418.3 967 34.9
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 4.5e-114 416.8 262 84.7
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 4.2e-112 410.2 983 33.7
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 2.1e-111 407.9 967 33.8
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 3.3e-109 400.6 888 35.0
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 5.7e-109 399.8 939 34.6
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 7.4e-109 399.4 968 33.6
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 8.5e-105 386.0 856 34.1
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 7.2e-104 382.9 986 31.6
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 7.2e-104 382.9 948 33.0
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 6.8e-102 376.3 939 33.2
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 3.5e-98 364.0 979 32.7
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 7.7e-98 362.8 910 33.0
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 2.2e-97 361.3 1091 30.7
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 2.9e-97 360.9 999 31.0
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 8.0e-95 352.8 913 31.0
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.8e-94 351.7 991 31.8
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 4.0e-94 350.5 849 32.7
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 2.0e-93 348.2 856 32.9
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 4.9e-92 343.6 966 29.9
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.1e-91 340.9 894 32.1
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.3e-89 335.5 889 32.6
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 5.0e-89 333.6 962 28.8
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 6.6e-89 333.2 891 32.2
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.1e-88 332.4 956 31.4
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 1.5e-88 332.0 714 35.7
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.5e-88 331.3 891 32.3
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 5.6e-88 330.1 716 34.5
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.2e-87 328.9 972 30.6
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 6.1e-87 326.6 872 31.8
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.4e-86 325.5 897 31.4
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.8e-86 325.1 920 32.3
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.4e-85 320.9 943 30.5
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.4e-85 320.5 943 30.5
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 4.9e-84 317.0 924 31.8
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 8.3e-84 316.2 900 29.9
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.4e-83 314.7 943 30.4
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 2.4e-83 314.7 907 31.4
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 7.0e-83 313.2 907 30.0
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 2.0e-82 311.6 973 29.7
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.6e-82 310.5 949 29.9
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 1.7e-81 308.5 945 29.6
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 2.5e-80 304.7 734 32.2
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 5.6e-80 303.5 873 31.6
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 1.0e-78 299.3 879 32.4
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 2.3e-78 298.1 885 31.1
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.8e-78 296.6 843 30.8
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 1.7e-76 292.0 746 32.3
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 2.4e-75 288.1 894 29.5
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 3.2e-75 287.7 854 30.7
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 3.2e-75 287.7 768 31.2
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 1.2e-74 285.8 906 30.9
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 6.0e-74 283.5 881 29.2
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 1.3e-73 282.3 839 29.7
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 8.6e-73 279.6 939 28.2
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 6.2e-71 273.5 960 28.5
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 4.0e-70 270.8 1013 27.4
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 9.8e-69 266.2 906 27.7
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 2.9e-68 264.6 939 28.5
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 5.4e-67 260.4 941 29.6
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.1e-66 258.5 918 28.8
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 3.5e-66 257.7 969 28.6
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 6.0e-66 256.9 909 27.6
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 2.3e-65 255.0 908 30.1
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.9e-65 254.2 932 28.6
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 5.6e-64 250.4 908 27.2
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 1.4e-62 245.7 859 27.7
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 5.8e-61 240.4 783 28.5
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 8.4e-60 236.5 924 26.0
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 8.4e-60 236.5 923 26.2
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 3.5e-58 231.1 867 27.9
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 1.0e-57 229.6 858 27.4
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 2.3e-57 228.4 910 26.8
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 5.1e-57 227.3 708 26.8
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 2.5e-56 224.9 867 27.2
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 2.1e-55 221.9 635 28.5
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 2.1e-55 221.9 667 28.0
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 5.2e-54 217.2 866 25.9
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 6.8e-54 216.9 646 26.6
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 2.6e-53 214.9 923 26.3
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 1.3e-52 212.6 837 25.4
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 1.1e-51 209.5 863 26.8
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 4.6e-50 204.1 648 26.9
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.3e-49 202.6 929 25.8
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 7.3e-48 196.8 924 25.1
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.6e-47 195.7 649 27.1
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 2.8e-47 194.9 926 25.6
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 6.2e-47 193.7 924 25.2
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 6.2e-47 193.7 923 25.5
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 6.2e-47 193.7 685 28.0
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 9.0e-46 189.9 924 25.6
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 2.0e-45 188.7 503 28.2
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.8e-44 184.5 407 32.4
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.9e-44 184.1 407 32.4
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.9e-44 184.1 407 32.4
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 8.4e-44 183.3 654 28.3
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.6e-42 179.1 911 25.7
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 8.7e-41 173.3 857 24.0
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 2.7e-34 151.8 228 40.4
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 6.0e-34 150.6 591 29.4
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.0e-33 149.8 730 24.1
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 6.7e-33 147.1 360 30.6
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 6.9e-30 137.1 759 24.4
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.3e-25 122.9 688 22.8
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 3.9e-25 121.3 70 84.3
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 4.3e-24 117.9 139 46.8
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 4.3e-24 117.9 284 29.9
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 8.2e-23 113.6 282 29.8
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 1.3e-20 106.3 418 28.5
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 8.4e-20 103.6 311 28.6
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 8.4e-20 103.6 382 26.4
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 3.2e-19 101.7 308 28.6
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 1.0e-17 96.7 308 28.9
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 5.7e-16 90.9 123 43.1
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.8e-14 85.9 112 38.4
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.9e-11 75.9 354 27.4
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 5.7e-08 64.3 144 34.0
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.2e-07 62.4 105 34.3
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 6.3e-07 60.8 177 32.2


User provided reference genes

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