Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 8.9e-298 1026.2 515 100.0
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 3.5e-294 1014.2 515 99.0
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 1.9e-255 885.6 530 86.8
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.1e-236 823.2 585 75.2
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.3e-213 745.7 561 73.6
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 9.4e-207 723.8 426 80.8
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.2e-206 723.4 433 81.3
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.0e-205 720.3 465 76.6
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 3.0e-205 718.8 470 74.9
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 4.0e-205 718.4 475 75.8
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.5e-204 716.5 532 69.2
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 3.4e-204 715.3 506 71.1
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.2e-203 712.6 548 65.3
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 4.8e-203 711.4 458 75.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 1.4e-202 709.9 515 69.9
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 4.1e-202 708.4 540 66.9
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 7.0e-202 707.6 503 70.8
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 1.2e-201 706.8 519 68.4
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.0e-201 706.1 527 67.7
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 2.7e-201 705.7 451 76.3
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 2.7e-201 705.7 533 68.5
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 3.5e-201 705.3 525 68.0
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.3e-200 703.4 525 68.0
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 2.9e-200 702.2 518 68.3
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.1e-199 700.3 504 70.6
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 1.5e-199 699.9 500 69.2
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.5e-199 699.9 527 67.0
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 2.5e-199 699.1 460 75.0
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 5.5e-199 698.0 504 70.8
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.6e-198 696.4 512 68.6
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.6e-198 695.3 443 75.8
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 6.1e-198 694.5 492 70.7
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 8.0e-198 694.1 517 67.5
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 8.0e-198 694.1 515 68.3
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 8.0e-198 694.1 515 68.3
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 1.8e-197 693.0 491 69.9
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.3e-197 692.6 499 67.9
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 3.0e-197 692.2 459 74.3
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 4.0e-197 691.8 489 69.5
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 8.9e-197 690.6 477 71.9
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 8.9e-197 690.6 501 68.9
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.6e-196 689.1 475 70.9
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.4e-196 688.7 511 68.3
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 4.4e-196 688.3 452 73.5
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 4.4e-196 688.3 513 66.5
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 4.4e-196 688.3 440 76.1
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 4.4e-196 688.3 516 68.4
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 4.4e-196 688.3 500 69.8
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 5.7e-196 688.0 430 77.2
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 7.5e-196 687.6 521 67.2
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 2.8e-195 685.6 475 71.6
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 9.2e-194 680.6 479 71.4
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.2e-193 680.2 503 69.4
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.2e-193 680.2 503 69.4
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 2.0e-193 679.5 524 66.4
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 2.0e-193 679.5 466 71.0
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 2.0e-193 679.5 423 77.5
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.0e-193 679.5 522 66.5
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 2.7e-193 679.1 519 66.5
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 3.5e-193 678.7 482 69.7
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 4.5e-193 678.3 462 74.2
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 4.5e-193 678.3 496 70.0
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 4.5e-193 678.3 496 70.0
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 4.5e-193 678.3 502 68.7
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 4.5e-193 678.3 521 67.4
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 7.8e-193 677.6 496 70.0
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 2.9e-192 675.6 457 71.1
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 2.9e-192 675.6 517 66.2
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 3.8e-192 675.2 500 69.8
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 6.6e-192 674.5 502 67.3
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.5e-191 673.3 514 67.1
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 1.5e-191 673.3 514 67.1
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.9e-191 672.9 418 77.0
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 4.3e-191 671.8 522 65.3
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 9.5e-191 670.6 514 66.5
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 9.5e-191 670.6 514 66.5
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.2e-190 670.2 522 66.3
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.2e-190 670.2 523 65.6
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 1.2e-190 670.2 514 66.9
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.6e-190 669.8 432 78.5
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 2.1e-190 669.5 533 64.7
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 2.1e-190 669.5 499 68.3
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.8e-190 669.1 514 66.9
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 2.8e-190 669.1 423 75.7
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 1.4e-189 666.8 445 73.0
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 4.0e-189 665.2 438 72.8
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 6.8e-189 664.5 465 69.7
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.2e-188 663.7 514 65.4
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 2.0e-188 662.9 512 65.6
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 2.0e-188 662.9 460 71.5
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 3.4e-188 662.1 448 73.2
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.9e-187 659.1 479 69.1
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.1e-186 657.1 521 66.2
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.1e-186 657.1 502 66.9
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.4e-186 656.8 418 74.6
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.9e-186 656.4 521 65.6
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 5.4e-186 654.8 495 68.7
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 9.2e-186 654.1 448 70.5
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-185 653.7 521 65.8
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 1.2e-182 643.7 421 73.6
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.6e-182 642.1 521 65.6
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.0e-182 641.0 528 63.8
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 4.0e-181 638.6 562 60.1
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.1e-178 630.6 578 59.7
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.4e-178 629.4 368 80.7
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 7.0e-178 627.9 419 74.9
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.0e-176 624.0 440 71.6
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 3.0e-176 622.5 419 70.9
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.5e-175 620.2 545 63.1
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 7.3e-175 617.8 497 65.2
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 2.6e-172 609.4 457 68.3
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.3e-171 607.1 461 65.5
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.4e-170 601.7 430 73.0
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 4.6e-169 598.6 592 57.3
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 2.3e-168 596.3 527 62.0
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 9.5e-167 590.9 454 71.4
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 2.4e-165 586.3 475 59.2
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.1e-162 577.4 417 66.9
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 1.9e-162 576.6 554 58.7
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 2.4e-162 576.2 460 62.0
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 6.0e-161 571.6 498 62.7
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 5.1e-160 568.5 374 73.8
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.5e-159 567.0 617 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.2e-158 563.9 455 62.2
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 1.6e-158 563.5 512 59.6
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 3.1e-157 559.3 520 59.0
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 6.9e-157 558.1 475 60.8
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.6e-156 556.2 422 62.3
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 3.8e-155 552.4 458 62.9
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 3.0e-152 542.7 479 60.8
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 7.3e-151 538.1 458 62.7
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.1e-149 534.3 416 67.5
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.5e-148 530.4 364 69.0
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 5.6e-143 511.9 455 61.3
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 2.1e-142 510.0 354 70.6
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.8e-142 508.8 418 62.4
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 6.2e-142 508.4 373 69.2
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 5.8e-140 501.9 541 53.0
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 8.4e-139 498.0 403 65.0
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.9e-138 496.9 328 75.0
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.5e-137 492.7 298 90.3
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 4.6e-137 492.3 347 71.8
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.0e-136 491.1 340 73.2
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 4.8e-134 482.3 363 68.9
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.0e-128 464.5 455 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.9e-120 436.0 336 62.8
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 4.3e-119 432.6 377 61.5
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 7.7e-116 421.8 276 74.6
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 3.0e-112 409.8 316 65.5
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.4e-101 373.6 210 82.9
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.5e-95 354.4 434 45.6
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.7e-75 287.7 281 58.4
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 6.1e-73 279.3 150 84.0
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.3e-67 260.8 193 61.7
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 6.6e-67 259.2 261 55.9
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 3.6e-65 253.4 238 60.1
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.2e-63 248.4 155 78.1
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.0e-59 235.3 390 35.9
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.3e-59 235.0 453 37.5
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 4.3e-58 229.9 160 61.2
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.4e-55 220.3 106 99.1
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.1e-50 205.3 519 31.8
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 7.1e-45 186.0 145 65.5
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 6.5e-22 109.8 195 34.4
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.8e-19 101.7 49 91.8
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.3e-18 97.4 286 28.7
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 3.1e-16 90.9 53 71.7
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 1.5e-15 88.6 51 74.5
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 4.5e-15 87.0 123 46.3
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 1.5e-10 72.0 106 43.4
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 4.3e-10 70.5 63 52.4
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.7e-09 67.4 39 76.9
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 5.3e-08 63.5 176 31.2
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 3.8e-06 57.4 49 61.2


User provided reference genes

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