Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 6.7e-102 374.0 188 100.0
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 3.3e-101 371.7 188 99.5
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.1e-94 347.8 188 93.1
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.7e-93 344.4 189 92.6
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.4e-91 339.0 188 88.3
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.2e-90 336.7 194 86.1
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 3.4e-90 335.1 190 88.4
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.7e-89 332.8 190 87.4
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 2.2e-89 332.4 188 85.6
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.9e-89 332.0 190 87.9
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.9e-89 332.0 188 86.2
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.8e-89 331.6 188 88.3
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 8.5e-89 330.5 188 87.8
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.4e-88 329.7 188 87.8
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 9.4e-88 327.0 189 85.2
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.6e-87 326.2 194 83.5
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.1e-87 325.9 189 84.7
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.7e-87 325.5 189 84.7
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 6.1e-87 324.3 193 83.4
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.4e-86 323.2 189 84.7
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.9e-86 321.6 204 79.9
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.7e-86 320.9 195 84.6
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 2.6e-85 318.9 193 82.9
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 2.6e-85 318.9 191 82.7
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 3.3e-85 318.5 194 83.0
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 3.3e-85 318.5 193 81.9
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 4.4e-85 318.2 194 82.5
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 5.7e-85 317.8 193 81.9
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.3e-84 316.6 193 82.4
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.3e-84 316.6 192 83.3
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.7e-84 316.2 189 83.1
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 3.7e-84 315.1 191 80.6
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 3.7e-84 315.1 193 81.3
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 3.7e-84 315.1 194 82.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 6.3e-84 314.3 194 82.0
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 8.2e-84 313.9 193 80.8
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 80.9
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.4e-83 313.2 191 80.1
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.8e-83 312.8 189 82.0
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 4.1e-83 311.6 191 80.6
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 4.1e-83 311.6 190 80.0
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 4.1e-83 311.6 190 80.5
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.3e-83 311.2 192 81.2
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 7.0e-83 310.8 193 81.9
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 7.0e-83 310.8 196 79.6
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.2e-82 310.1 198 77.8
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.6e-82 309.7 193 80.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.6e-82 309.7 197 77.2
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.6e-82 309.7 197 79.2
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 2.6e-82 308.9 194 79.4
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.5e-82 308.5 192 80.2
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 4.5e-82 308.1 189 81.0
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.0e-81 307.0 195 77.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 3.8e-81 305.1 192 77.1
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 6.5e-81 304.3 191 77.5
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 8.5e-81 303.9 212 73.6
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 8.5e-81 303.9 196 78.6
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 8.5e-81 303.9 198 76.3
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.1e-80 303.5 189 80.4
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.5e-80 302.4 194 77.3
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.5e-80 302.4 194 77.3
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.2e-80 302.0 198 75.3
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 3.2e-80 302.0 192 79.7
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 4.2e-80 301.6 194 76.8
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 4.2e-80 301.6 199 75.4
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 5.5e-80 301.2 194 76.8
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 7.2e-80 300.8 201 75.1
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 7.2e-80 300.8 194 76.3
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.4e-80 300.4 201 73.1
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.2e-79 300.1 199 75.4
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.2e-79 300.1 199 75.4
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.6e-79 299.7 199 74.9
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 2.1e-79 299.3 199 74.9
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.1e-79 299.3 196 76.0
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 2.7e-79 298.9 200 74.5
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.7e-79 298.9 198 76.8
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.6e-79 298.5 200 74.5
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.6e-79 298.5 200 74.5
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 4.7e-79 298.1 199 74.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 4.7e-79 298.1 199 74.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 4.7e-79 298.1 197 74.6
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 8.0e-79 297.4 203 72.9
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 8.0e-79 297.4 203 71.4
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.4e-78 296.6 199 74.4
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.4e-78 296.6 199 73.4
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.4e-78 296.6 199 73.9
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 2.3e-78 295.8 199 74.4
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 2.3e-78 295.8 199 74.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.0e-78 295.4 194 75.3
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 4.0e-78 295.0 197 75.1
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 4.0e-78 295.0 197 75.1
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 4.0e-78 295.0 199 74.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.0e-78 295.0 202 74.3
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 8.8e-78 293.9 200 73.0
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 8.8e-78 293.9 237 65.0
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.2e-77 293.5 206 72.8
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.2e-77 293.5 201 74.6
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.2e-77 293.5 201 71.1
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.5e-77 293.1 204 71.1
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.6e-77 292.4 201 72.1
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 7.5e-77 290.8 196 75.0
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 7.5e-77 290.8 198 74.7
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 9.7e-77 290.4 198 74.7
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 9.7e-77 290.4 202 72.8
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.7e-76 289.7 194 76.3
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 2.2e-76 289.3 195 76.4
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.2e-76 289.3 194 76.3
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.1e-75 287.0 191 77.5
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 3.1e-75 285.4 198 74.7
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 7.0e-75 284.3 198 73.7
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.6e-74 283.1 198 71.7
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.6e-74 283.1 200 71.5
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.6e-74 283.1 192 74.0
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 2.0e-74 282.7 200 71.5
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 2.0e-74 282.7 211 68.7
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 7.7e-74 280.8 196 70.4
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 8.5e-73 277.3 171 78.4
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.5e-72 275.8 199 70.4
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.2e-72 275.0 174 78.7
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 9.4e-72 273.9 192 71.4
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.1e-71 272.7 186 73.1
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 8.0e-71 270.8 192 71.4
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.4e-70 270.0 223 63.7
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.3e-70 269.2 204 70.1
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 4.0e-70 268.5 210 68.1
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.5e-69 266.5 183 72.7
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.0e-69 266.2 175 75.4
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.6e-69 265.8 187 71.7
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.3e-68 263.5 201 67.7
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.7e-68 263.1 197 66.5
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.8e-68 262.3 180 73.3
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 6.3e-68 261.2 233 62.2
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 4.1e-67 258.5 196 65.8
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.1e-67 258.5 181 69.6
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 2.3e-65 252.7 187 72.2
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.8e-65 251.9 184 67.4
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 2.8e-63 245.7 213 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 3.4e-61 238.8 174 67.8
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 9.8e-61 237.3 198 58.6
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 4.9e-60 235.0 182 64.8
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 6.3e-60 234.6 188 65.4
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 2.4e-59 232.6 201 62.7
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 4.5e-58 228.4 177 65.5
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 7.8e-50 201.1 153 67.3
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.0e-49 198.4 122 82.0
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.0e-45 186.4 116 77.6
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.3e-44 183.7 99 97.0
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 7.0e-43 177.9 100 91.0
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.6e-42 176.8 171 56.1
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.9e-40 169.9 102 83.3
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.0e-38 162.2 97 80.4
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 2.2e-36 156.4 189 50.8
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 2.6e-29 132.9 191 47.1
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.4e-29 132.5 103 67.0
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.4e-29 132.1 70 92.9
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 8.4e-28 127.9 75 74.7
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.1e-27 127.5 97 69.1
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.1e-26 123.2 72 76.4
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 7.8e-26 121.3 192 39.1
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 8.6e-25 117.9 184 39.7
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 2.6e-21 106.3 99 59.6
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 4.9e-20 102.1 189 41.3
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 4.2e-19 99.0 71 74.6
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.0e-17 94.4 189 39.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.8e-15 86.3 61 63.9
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 3.6e-15 85.9 78 52.6
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 8.1e-15 84.7 161 34.2
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.0e-13 80.1 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.4e-13 79.3 53 75.5
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.4e-13 79.3 51 64.7
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 9.3e-11 71.2 55 61.8
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 6.7e-09 65.1 72 52.8


User provided reference genes

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