Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g038190.3 Solanum lycopersicum HOM05D035507 ORTHO05D003543 9.3e-62 240.0 116 100.0
Sopen07g017530 Solanum pennellii HOM05D035507 ORTHO05D003543 4.3e-59 231.1 116 95.7
PGSC0003DMG400013153 Solanum tuberosum HOM05D035507 ORTHO05D003543 5.5e-54 214.2 119 90.8
Nitab4.5_0005033g0020 Nicotiana tabacum HOM05D003196 ORTHO05D003543 1.4e-36 156.4 100 77.0
Nitab4.5_0005634g0090 Nicotiana tabacum HOM05D003196 ORTHO05D003543 1.4e-36 156.4 99 75.8
MSTRG.6059 Avicennia marina HOM05D003196 ORTHO05D003543 2.8e-10 68.9 88 44.3
Cc06_g11370 Coffea canephora HOM05D003196 ORTHO05D003543 4.8e-10 68.2 93 47.3
Sed0023272 Sechium edule HOM05D003196 ORTHO05D003543 3.1e-09 65.5 87 41.4
COL.COLO4_30652 Corchorus olitorius HOM05D000032 ORTHO05D002561 4.1e-09 65.1 95 43.2
RcHm_v2.0_Chr2g0142911 Rosa chinensis HOM05D003196 ORTHO05D003543 1.6e-08 63.2 90 47.8
PGR102G1948 Punica granatum HOM05D003196 ORTHO05D003543 2.0e-08 62.8 111 40.5
Oeu018419.1 Olea europaea HOM05D003196 ORTHO05D003543 3.5e-08 62.0 85 41.2
Dinv36763 Davidia involucrata HOM05D003196 ORTHO05D003543 4.5e-08 61.6 90 44.4
FAN05G4539 Fragaria x ananassa HOM05D003196 ORTHO05D003543 4.5e-08 61.6 98 40.8
SGA_v2.0_scaffold260G45874 Striga asiatica HOM05D003196 ORTHO05D003543 4.5e-08 61.6 89 41.6
Actinidia29882 Actinidia chinensis HOM05D003196 ORTHO05D003543 7.7e-08 60.8 105 41.9
Rhsim03G0232800 Rhododendron simsii HOM05D003196 ORTHO05D003543 7.7e-08 60.8 95 42.1
MD09G1194300 Malus domestica HOM05D003196 ORTHO05D003543 1.0e-07 60.5 89 43.8
Psat4g014720 Pisum sativum HOM05D003196 ORTHO05D003543 1.3e-07 60.1 94 39.4
vmacro06288 Vaccinium macrocarpon HOM05D003196 ORTHO05D003543 1.3e-07 60.1 87 43.7
vmacro23431 Vaccinium macrocarpon HOM05D003196 ORTHO05D003543 1.3e-07 60.1 87 43.7
Ciclev10009803m.g Citrus clementina HOM05D003196 ORTHO05D003543 1.7e-07 59.7 118 34.7
Glyma.17G055300 Glycine max HOM05D003196 ORTHO05D003543 2.3e-07 59.3 96 37.5
THA.LOC104822633 Tarenaya hassleriana HOM05D003196 ORTHO05D003543 2.3e-07 59.3 101 34.7
TPR.G5401 Trifolium pratense HOM05D003196 ORTHO05D003543 2.3e-07 59.3 94 37.2
MELO3C024395.2 Cucumis melo HOM05D003196 ORTHO05D003543 2.9e-07 58.9 88 43.2
FvH4_6g33180 Fragaria vesca HOM05D003196 ORTHO05D003543 2.9e-07 58.9 98 39.8
HanXRQChr10g0313061 Helianthus annuus HOM05D003196 ORTHO05D003543 2.9e-07 58.9 87 37.9
CsaV3_7G034840 Cucumis sativus L. HOM05D003196 ORTHO05D003543 5.0e-07 58.2 88 42.0
FAN14G0807 Fragaria x ananassa HOM05D003196 ORTHO05D003543 6.6e-07 57.8 98 39.8
PSO063G3162 Papaver somniferum HOM05D003196 ORTHO05D003543 6.6e-07 57.8 92 34.8
Potri.001G200200 Populus trichocarpa HOM05D003196 ORTHO05D003543 8.6e-07 57.4 88 42.0
QL04p071305 Quercus lobata HOM05D003196 ORTHO05D003543 8.6e-07 57.4 87 41.4
CiPaw.02G140800 Carya illinoinensis HOM05D003196 ORTHO05D003543 1.1e-06 57.0 95 37.9
Medtr4g126360 Medicago truncatula HOM05D003196 ORTHO05D003543 1.1e-06 57.0 111 33.3
Nn8g38879 Nelumbo nucifera HOM05D003196 ORTHO05D003543 1.1e-06 57.0 93 40.9
Hund20859 Selenicereus undatus HOM05D003196 ORTHO05D003543 1.1e-06 57.0 95 36.8
TAR636G1648 Trochodendron aralioides HOM05D003196 ORTHO05D003543 1.1e-06 57.0 92 40.2
Ah.14g085200 Amaranthus hybridus HOM05D003196 ORTHO05D003543 1.5e-06 56.6 102 38.2
ClCG09G000640 Citrullus lanatus HOM05D003196 ORTHO05D003543 1.5e-06 56.6 88 43.2
Sed0009658 Sechium edule HOM05D003196 ORTHO05D003543 1.5e-06 56.6 90 42.2
EL10Ac8g19223 Beta vulgaris HOM05D003196 ORTHO05D003543 1.9e-06 56.2 100 38.0
Eucgr.F03128 Eucalyptus grandis HOM05D003196 ORTHO05D003543 1.9e-06 56.2 103 37.9
Sc18g0002010 Simmondsia chinensis HOM05D003196 ORTHO05D003543 1.9e-06 56.2 103 35.9
Gohir.D10G061900 Gossypium hirsutum HOM05D003196 ORTHO05D003543 2.5e-06 55.8 90 38.9
Gorai.011G066100 Gossypium raimondii HOM05D003196 ORTHO05D003543 2.5e-06 55.8 90 38.9
Cpa.g.sc93.25 Carica papaya HOM05D003196 ORTHO05D003543 3.3e-06 55.5 116 39.7
HanXRQChr03g0060431 Helianthus annuus HOM05D003196 ORTHO05D003543 3.3e-06 55.5 84 42.9
Thecc.06G109100 Theobroma cacao HOM05D003196 ORTHO05D003543 3.3e-06 55.5 94 42.6
Ah.15g094190 Amaranthus hybridus HOM05D003196 ORTHO05D003543 4.2e-06 55.1 98 37.8
ATR0749G003 Amborella trichopoda HOM05D003196 ORTHO05D003543 7.2e-06 54.3 97 36.1
Duzib192G0676 Durio zibethinus HOM05D003196 ORTHO05D003543 7.2e-06 54.3 88 43.2
Duzib235G0666 Durio zibethinus HOM05D003196 ORTHO05D003543 7.2e-06 54.3 94 41.5
Ca_23312_v3 Cicer arietinum L. HOM05D003196 ORTHO05D003543 9.5e-06 53.9 88 37.5


User provided reference genes

Program Settings