Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g038100.3 Solanum lycopersicum HOM05D007811 ORTHO05D009888 0.0e+00 1354.3 685 100.0
Sopen07g018370 Solanum pennellii HOM05D007811 ORTHO05D009888 0.0e+00 1320.4 685 98.4
PGSC0003DMG400009724 Solanum tuberosum HOM05D007811 ORTHO05D009888 0.0e+00 1252.3 686 93.1
Nitab4.5_0005634g0040 Nicotiana tabacum HOM05D007811 ORTHO05D009888 2.9e-304 1048.1 686 78.0
Nitab4.5_0004978g0030 Nicotiana tabacum HOM05D007811 ORTHO05D009888 4.6e-302 1040.8 686 77.3
Peaxi162Scf01121g00111 Petunia axillaris HOM05D007811 ORTHO05D009888 1.8e-258 896.0 711 67.9
Actinidia39718 Actinidia chinensis HOM05D007811 ORTHO05D009888 1.9e-162 577.0 691 45.7
TAR383G0833 Trochodendron aralioides HOM05D007811 ORTHO05D009888 2.1e-153 547.0 696 45.1
QL02p062715 Quercus lobata HOM05D007811 ORTHO05D009888 8.8e-152 541.6 695 42.3
Prupe.7G209900 Prunus persica HOM05D007811 ORTHO05D009888 1.7e-150 537.3 696 43.5
Hma1.2p1_0798F.1_g219820 Hydrangea macrophylla HOM05D007811 ORTHO05D009888 9.1e-149 531.6 688 44.9
COL.COLO4_18202 Corchorus olitorius HOM05D007811 ORTHO05D009888 4.5e-148 529.3 683 43.2
Haze_25911 Corylus avellana HOM05D007811 ORTHO05D009888 4.5e-148 529.3 686 43.3
Ciclev10010815m.g Citrus clementina HOM05D007811 ORTHO05D009888 1.1e-146 524.6 699 42.3
SalBow6G0727 Salvia bowleyana HOM05D007811 ORTHO05D009888 1.2e-145 521.2 691 44.3
MD02G1079300 Malus domestica HOM05D007811 ORTHO05D009888 1.0e-144 518.1 697 43.5
Dinv42318 Davidia involucrata HOM05D007811 ORTHO05D009888 4.4e-143 512.7 559 48.1
GSVIVG01015202001 Vitis vinifera HOM05D007811 ORTHO05D009888 2.8e-142 510.0 695 42.9
SGA_v2.0_scaffold10G05228 Striga asiatica HOM05D007811 ORTHO05D009888 1.4e-141 507.7 701 43.4
DCAR_032238 Daucus carota HOM05D007811 ORTHO05D009888 2.4e-141 506.9 699 44.6
Atru.chr7.1587 Acer truncatum HOM05D007811 ORTHO05D009888 1.6e-140 504.2 628 45.2
TWI34G0321 Tripterygium wilfordii HOM05D007811 ORTHO05D009888 1.7e-139 500.7 699 43.1
Gohir.A07G011000 Gossypium hirsutum HOM05D007811 ORTHO05D009888 6.6e-139 498.8 694 41.6
Hma1.2p1_2664F.1_g326430 Hydrangea macrophylla HOM05D007811 ORTHO05D009888 1.1e-138 498.0 661 44.6
Duzib168G1142 Durio zibethinus HOM05D007811 ORTHO05D009888 1.9e-138 497.3 691 42.0
MSTRG.19514 Avicennia marina HOM05D007811 ORTHO05D009888 3.3e-138 496.5 718 41.9
Gohir.D07G011150 Gossypium hirsutum HOM05D007811 ORTHO05D009888 1.5e-135 487.6 694 41.6
Gorai.001G011700 Gossypium raimondii HOM05D007811 ORTHO05D009888 3.4e-135 486.5 694 41.6
Potri.006G144600 Populus trichocarpa HOM05D007811 ORTHO05D009888 3.4e-135 486.5 698 42.0
RcHm_v2.0_Chr2g0093321 Rosa chinensis HOM05D007811 ORTHO05D009888 3.4e-135 486.5 691 41.4
CiPaw.03G216500 Carya illinoinensis HOM05D007811 ORTHO05D009888 7.0e-133 478.8 630 40.3
Cfa003088 Carpinus fangiana HOM05D007811 ORTHO05D009888 1.2e-132 478.0 684 40.4
FAN23G0562 Fragaria x ananassa HOM05D007811 ORTHO05D009888 2.0e-132 477.2 690 41.0
FAN19G2727 Fragaria x ananassa HOM05D007811 ORTHO05D009888 4.6e-132 476.1 693 40.5
FAN26G0113 Fragaria x ananassa HOM05D007811 ORTHO05D009888 6.0e-132 475.7 693 40.8
FAN28G1627 Fragaria x ananassa HOM05D007811 ORTHO05D009888 3.0e-131 473.4 686 41.0
Manes.03G033600 Manihot esculenta HOM05D007811 ORTHO05D009888 5.0e-131 472.6 694 40.2
FvH4_1g07420 Fragaria vesca HOM05D007811 ORTHO05D009888 5.6e-130 469.2 693 40.3
Sabra06G0113100 Salix brachista HOM05D007811 ORTHO05D009888 9.5e-130 468.4 697 40.9
Sabra06G0114400 Salix brachista HOM05D007811 ORTHO05D009888 9.5e-130 468.4 697 40.9
HanXRQChr12g0354871 Helianthus annuus HOM05D007811 ORTHO05D009888 2.0e-127 460.7 687 40.8
Thecc.09G089600 Theobroma cacao HOM05D007811 ORTHO05D009888 1.9e-125 454.1 557 43.8
CANSAT56G0268 Cannabis sativa HOM05D007811 ORTHO05D009888 2.4e-125 453.8 685 40.4
Aqoxy7G04046 Aquilegia oxysepala HOM05D007811 ORTHO05D009888 9.5e-122 441.8 692 38.0
Migut.J00617 Erythranthe guttata HOM05D007811 ORTHO05D009888 5.2e-120 436.0 561 42.6
THA.LOC104817755 Tarenaya hassleriana HOM05D007811 ORTHO05D009888 2.2e-118 430.6 694 40.3
ECA234G0321 Erigeron canadensis HOM05D007811 ORTHO05D009888 8.3e-118 428.7 688 39.4
Lsat_1_v5_gn_5_142361 Lactuca sativa HOM05D007811 ORTHO05D009888 2.4e-117 427.2 683 39.8
FAN26G2623 Fragaria x ananassa HOM05D007811 ORTHO05D009888 7.3e-114 415.6 612 39.7
Sc18g0001990 Simmondsia chinensis HOM05D007811 ORTHO05D009888 6.8e-112 409.1 694 38.2
PGR102G3061 Punica granatum HOM05D007811 ORTHO05D009888 2.1e-108 397.5 697 37.9
CANSAT56G0922 Cannabis sativa HOM05D007811 ORTHO05D009888 1.1e-106 391.7 677 37.8
Oeu042653.6 Olea europaea HOM05D007811 ORTHO05D009888 4.6e-100 369.8 693 36.8
PSO210G1027 Papaver somniferum HOM05D007811 ORTHO05D009888 1.3e-99 368.2 697 35.3
PSO210G6552 Papaver somniferum HOM05D007811 ORTHO05D009888 1.6e-97 361.3 693 34.6
Thhalv10006501m.g Eutrema salsugineum HOM05D007811 ORTHO05D009888 4.8e-97 359.8 714 35.2
CAN.G720.2 Capsicum annuum HOM05D007811 ORTHO05D009888 1.4e-96 358.2 220 78.2
CARHR170630 Cardamine hirsuta HOM05D007811 ORTHO05D009888 4.0e-96 356.7 700 36.0
AT3G60310 Arabidopsis thaliana HOM05D007811 ORTHO05D009888 9.0e-96 355.5 668 37.3
AL5G42530 Arabidopsis lyrata HOM05D007811 ORTHO05D009888 1.2e-95 355.1 695 35.5
BcaB02g08177 Brassica carinata HOM05D007811 ORTHO05D009888 3.4e-95 353.6 692 36.4
Carub.0005s2705 Capsella rubella HOM05D007811 ORTHO05D009888 3.8e-94 350.1 642 38.3
BolC4t24783H Brassica oleracea HOM05D007811 ORTHO05D009888 3.2e-93 347.1 690 35.4
BraA04t15894Z Brassica rapa HOM05D007811 ORTHO05D009888 3.2e-93 347.1 693 34.5
BcaC02g10146 Brassica carinata HOM05D007811 ORTHO05D009888 2.1e-92 344.4 690 35.2
Cc00_g27490 Coffea canephora HOM05D007811 ORTHO05D009888 4.6e-92 343.2 383 50.1
C04p32330 Brassica napus HOM05D007811 ORTHO05D009888 7.9e-92 342.4 690 35.2
A04p01700 Brassica napus HOM05D007811 ORTHO05D009888 7.4e-90 335.9 707 33.8
Nn6g35473 Nelumbo nucifera HOM05D007811 ORTHO05D009888 1.4e-88 331.6 678 36.0
ATR0749G017 Amborella trichopoda HOM05D007811 ORTHO05D009888 1.2e-79 302.0 763 31.6
Zm00001eb376990 Zea mays HOM05D007811 ORTHO05D009888 1.2e-79 302.0 697 32.4
HPP92_003971 Vanilla planifolia HOM05D007811 ORTHO05D009888 2.0e-79 301.2 697 31.0
Cpa.g.sc93.35 Carica papaya HOM05D007811 ORTHO05D009888 5.5e-77 293.1 426 38.3
Eucgr.C03899 Eucalyptus grandis HOM05D007811 ORTHO05D009888 2.5e-69 267.7 423 37.1
Cpa.g.sc93.36 Carica papaya HOM05D007811 ORTHO05D009888 3.0e-59 234.2 267 49.1
MBI01_g21120_MAGBIO Magnolia biondii HOM05D007811 ORTHO05D009888 1.4e-56 225.3 446 33.4
SEGI_03446 Sequoiadendron giganteum HOM05D007811 ORTHO05D009888 8.8e-51 206.1 780 25.3
DCAR_028591 Daucus carota HOM05D007811 ORTHO05D009888 2.4e-48 198.0 546 29.9
CAN.G720.1 Capsicum annuum HOM05D007811 ORTHO05D009888 3.6e-44 184.1 111 82.0
SEGI_10589 Sequoiadendron giganteum HOM05D007811 ORTHO05D009888 1.1e-29 136.0 573 24.1
Cfa003090 Carpinus fangiana HOM05D007811 ORTHO05D009888 2.2e-25 121.7 157 38.2
CDE04G1243 Ceratophyllum demersum HOM05D000793 ORTHO05D000783 1.6e-23 115.5 393 27.2
Mapoly0096s0065 Marchantia polymorpha HOM05D007811 ORTHO05D009888 6.8e-19 100.1 253 29.6
Haze_25909 Corylus avellana HOM05D007811 ORTHO05D009888 3.0e-14 84.7 121 43.8
AagrBONN_evm.TU.Sc2ySwM_344.5247 Anthoceros agrestis HOM05D007811 ORTHO05D009888 6.6e-14 83.6 345 23.5


User provided reference genes

Program Settings