Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.4e-113 411.8 219 100.0
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 2.9e-88 328.9 264 72.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.6e-46 190.3 143 76.2
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 3.6e-46 189.1 143 76.2
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.1e-44 184.1 143 72.7
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 7.4e-44 181.4 143 71.3
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.4e-42 177.2 143 69.2
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 4.1e-42 175.6 143 69.2
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.5e-41 173.7 120 83.3
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 5.2e-37 158.7 143 62.2
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 3.3e-36 156.0 139 61.9
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 4.4e-36 155.6 143 60.1
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 4.4e-36 155.6 140 61.4
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 5.7e-36 155.2 145 59.3
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 5.7e-36 155.2 143 60.1
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 9.7e-36 154.5 145 59.3
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 9.7e-36 154.5 143 60.1
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.8e-35 152.9 142 60.6
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 3.7e-35 152.5 145 58.6
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 6.3e-35 151.8 143 60.1
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 6.3e-35 151.8 145 57.2
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.1e-34 151.0 143 59.4
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.1e-34 151.0 142 57.0
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.4e-34 150.6 143 57.3
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.8e-34 150.2 142 57.7
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.4e-34 149.8 143 57.3
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 3.1e-34 149.4 143 58.7
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 4.1e-34 149.1 142 57.0
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 4.1e-34 149.1 143 58.0
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 4.1e-34 149.1 143 57.3
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 4.1e-34 149.1 143 57.3
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 4.1e-34 149.1 142 57.7
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 7.0e-34 148.3 143 58.0
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 7.0e-34 148.3 142 57.7
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 7.0e-34 148.3 140 57.9
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 9.1e-34 147.9 143 58.0
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 9.1e-34 147.9 143 58.7
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.2e-33 147.5 142 59.2
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.2e-33 147.5 143 56.6
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 1.6e-33 147.1 140 56.4
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.6e-33 147.1 143 57.3
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.6e-33 147.1 143 58.0
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 2.0e-33 146.7 142 54.9
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 2.0e-33 146.7 143 58.0
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.6e-33 146.4 145 54.5
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 3.5e-33 146.0 143 57.3
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.5e-33 146.0 140 56.4
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 3.5e-33 146.0 145 57.9
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 3.5e-33 146.0 142 57.7
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 4.5e-33 145.6 140 57.1
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 4.5e-33 145.6 144 56.9
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 4.5e-33 145.6 140 55.0
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 5.9e-33 145.2 142 57.0
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 7.7e-33 144.8 140 56.4
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 7.7e-33 144.8 143 56.6
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.0e-32 144.4 139 59.0
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.3e-32 144.1 140 57.1
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.7e-32 143.7 139 56.8
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.2e-32 143.3 142 55.6
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 2.9e-32 142.9 143 55.2
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.8e-32 142.5 140 56.4
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 3.8e-32 142.5 142 56.3
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.0e-32 142.1 140 57.1
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 5.0e-32 142.1 142 57.0
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 6.5e-32 141.7 142 54.9
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 6.5e-32 141.7 143 55.9
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 6.5e-32 141.7 143 55.9
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 6.5e-32 141.7 143 54.5
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 6.5e-32 141.7 140 55.0
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 8.5e-32 141.4 142 54.9
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 8.5e-32 141.4 140 55.7
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.1e-31 141.0 140 55.7
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.5e-31 140.6 143 55.9
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.5e-31 140.6 140 55.0
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.9e-31 140.2 139 56.1
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.9e-31 140.2 139 56.1
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.5e-31 139.8 139 56.8
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.2e-31 139.4 140 55.0
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.2e-31 139.4 140 54.3
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.2e-31 139.4 139 56.8
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 3.2e-31 139.4 139 56.8
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.2e-31 139.0 143 53.1
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 5.5e-31 138.7 142 54.2
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 1.2e-30 137.5 143 52.4
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 1.6e-30 137.1 139 56.1
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.1e-30 136.7 140 53.6
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 4.7e-30 135.6 139 54.7
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.0e-29 134.4 139 55.4
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.8e-29 133.7 142 51.4
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.8e-29 133.7 140 53.6
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.8e-29 133.7 142 52.8
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 3.0e-29 132.9 140 52.9
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 4.0e-29 132.5 140 53.6
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 3.3e-28 129.4 142 51.4
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 5.7e-28 128.6 139 51.1
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 7.5e-28 128.3 138 51.4
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.7e-27 127.1 143 53.1
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.7e-27 125.9 141 53.2
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.7e-27 125.9 141 53.2
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 6.3e-27 125.2 143 50.3
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 6.3e-27 125.2 142 50.0
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 8.2e-27 124.8 137 48.2
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 8.2e-27 124.8 137 48.2
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 2.4e-26 123.2 142 52.8
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 5.3e-26 122.1 141 50.4
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 5.3e-26 122.1 144 48.6
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 7.0e-26 121.7 140 50.0
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 9.1e-26 121.3 141 50.4
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-25 120.9 141 49.6
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 1.6e-25 120.6 141 51.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 2.7e-25 119.8 143 51.0
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 4.5e-25 119.0 143 49.0
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 5.9e-25 118.6 142 43.7
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.0e-24 117.9 139 51.8
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.7e-24 117.1 145 47.6
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.5e-24 114.8 140 47.9
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.5e-23 114.0 142 43.0
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 7.2e-23 111.7 139 45.3
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.6e-22 110.5 140 46.4
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.0e-21 107.8 157 44.6
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.0e-21 107.8 88 63.6
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.0e-21 107.8 101 58.4
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.8e-21 107.1 140 47.9
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 2.3e-21 106.7 121 48.8
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.8e-21 105.1 103 49.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.0e-20 103.6 142 44.4
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 5.7e-20 102.1 160 45.0
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 3.7e-19 99.4 143 42.7
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 5.9e-17 92.0 197 38.1
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 6.5e-16 88.6 140 40.7
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.2e-14 84.3 123 43.1
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.4e-12 76.3 119 37.8
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.8e-11 73.2 105 43.8
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 2.4e-10 70.1 143 35.0
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.0e-09 67.0 83 49.4
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.7e-09 66.6 131 36.6
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.8e-06 56.6 92 38.0
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 3.6e-06 56.2 63 44.4
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.7e-06 55.8 61 49.2


User provided reference genes

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