Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g032300.1 Solanum lycopersicum HOM05D000015 ORTHO05D390057 9.8e-30 132.9 71 100.0
Peaxi162Scf00912g00021 Petunia axillaris HOM05D000015 ORTHO05D001173 4.1e-12 74.3 62 64.5
CAN.G303.20 Capsicum annuum HOM05D000015 ORTHO05D001173 5.4e-12 73.9 62 64.5
CAN.G303.19 Capsicum annuum HOM05D000015 ORTHO05D001173 3.5e-11 71.2 62 62.9
Sopen03g021990 Solanum pennellii HOM05D000015 ORTHO05D001173 6.0e-11 70.5 62 64.5
Solyc03g081260.4 Solanum lycopersicum HOM05D000015 ORTHO05D001173 7.8e-11 70.1 62 64.5
Zm00001eb283230 Zea mays HOM05D000015 ORTHO05D001173 7.3e-09 63.5 73 53.4
PGSC0003DMG401000585 Solanum tuberosum HOM05D000015 ORTHO05D001173 2.8e-08 61.6 51 62.7
Os01g0795200 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 3.6e-08 61.2 62 56.5
QL09p007201 Quercus lobata HOM05D000015 ORTHO05D001173 4.7e-08 60.8 64 57.8
Duzib205G1705 Durio zibethinus HOM05D000015 ORTHO05D001173 6.2e-08 60.5 73 52.1
PGR142G1317 Punica granatum HOM05D000015 ORTHO05D001173 6.2e-08 60.5 80 48.8
Gohir.D04G000060 Gossypium hirsutum HOM05D000015 ORTHO05D001173 8.1e-08 60.1 73 52.1
Gohir.D04G000090 Gossypium hirsutum HOM05D000015 ORTHO05D001173 8.1e-08 60.1 73 52.1
Gorai.012G000900 Gossypium raimondii HOM05D000015 ORTHO05D001173 8.1e-08 60.1 73 52.1
Haze_00296 Corylus avellana HOM05D000015 ORTHO05D001173 1.1e-07 59.7 64 56.2
GSVIVG01038620001 Vitis vinifera HOM05D000015 ORTHO05D001173 1.4e-07 59.3 68 51.5
GSVIVG01038641001 Vitis vinifera HOM05D000015 ORTHO05D001173 1.4e-07 59.3 68 51.5
Lj3A895G48 Lonicera japonica HOM05D000015 ORTHO05D001173 1.8e-07 58.9 65 56.9
Solyc03g081250.3 Solanum lycopersicum HOM05D000015 ORTHO05D001173 2.4e-07 58.5 48 62.5
Thecc.03G208600 Theobroma cacao HOM05D000015 ORTHO05D001173 2.4e-07 58.5 71 54.9
Os01g0795400 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 3.1e-07 58.2 62 54.8
CAN.G303.17 Capsicum annuum HOM05D000015 ORTHO05D001173 4.0e-07 57.8 62 59.7
COL.COLO4_14369 Corchorus olitorius HOM05D000015 ORTHO05D001173 5.2e-07 57.4 73 50.7
Sed0020314 Sechium edule HOM05D000015 ORTHO05D001173 5.2e-07 57.4 66 56.1
CANSAT21G2323 Cannabis sativa HOM05D000015 ORTHO05D001173 6.8e-07 57.0 66 56.1
COL.COLO4_10835 Corchorus olitorius HOM05D000015 ORTHO05D001173 6.8e-07 57.0 66 53.0
Os02g0270900 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 6.8e-07 57.0 68 50.0
CDE02G1270 Ceratophyllum demersum HOM05D000015 ORTHO05D001173 8.9e-07 56.6 66 53.0
Thecc.03G217100 Theobroma cacao HOM05D000015 ORTHO05D001173 8.9e-07 56.6 66 53.0
Os02g0270800 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 1.2e-06 56.2 67 52.2
GSVIVG01038642001 Vitis vinifera HOM05D000015 ORTHO05D001173 1.2e-06 56.2 68 52.9
THA.LOC104805976 Tarenaya hassleriana HOM05D000015 ORTHO05D001173 1.5e-06 55.8 63 54.0
Zm00001eb150950 Zea mays HOM05D000015 ORTHO05D001173 1.5e-06 55.8 62 54.8
AL1G47280 Arabidopsis lyrata HOM05D000015 ORTHO05D001173 2.0e-06 55.5 66 53.0
BcaB05g23893 Brassica carinata HOM05D000015 ORTHO05D001173 2.0e-06 55.5 66 54.5
BolC2t10262H Brassica oleracea HOM05D000015 ORTHO05D001173 2.0e-06 55.5 62 56.5
Carub.0001s3128 Capsella rubella HOM05D000015 ORTHO05D001173 2.0e-06 55.5 66 53.0
Os01g0795000 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 2.0e-06 55.5 62 53.2
RcHm_v2.0_Chr7g0187621 Rosa chinensis HOM05D000015 ORTHO05D001173 2.0e-06 55.5 66 53.0
Sp1g28020 Schrenkiella parvula HOM05D000015 ORTHO05D001173 2.0e-06 55.5 66 53.0
Actinidia22224 Actinidia chinensis HOM05D000015 ORTHO05D001173 2.6e-06 55.1 69 52.2
MBI04_g11120_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D001173 2.6e-06 55.1 62 53.2
Oeu021647.1 Olea europaea HOM05D000015 ORTHO05D001173 2.6e-06 55.1 64 53.1
PGR042G1838 Punica granatum HOM05D000015 ORTHO05D001173 2.6e-06 55.1 68 50.0
vmacro13836 Vaccinium macrocarpon HOM05D000015 ORTHO05D001173 2.6e-06 55.1 68 50.0
ATR0083G049 Amborella trichopoda HOM05D000015 ORTHO05D001173 3.4e-06 54.7 65 52.3
Duzib205G0472 Durio zibethinus HOM05D000015 ORTHO05D001173 3.4e-06 54.7 66 51.5
Os01g0795100 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 3.4e-06 54.7 62 53.2
Os04g0120300 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 3.4e-06 54.7 69 46.4
Os04g0121100 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 3.4e-06 54.7 69 49.3
Potri.001G450600 Populus trichocarpa HOM05D000015 ORTHO05D001173 3.4e-06 54.7 66 54.5
SMO169G0231 Selaginella moellendorffii HOM05D000015 ORTHO05D026131 3.4e-06 54.7 65 53.8
SMO298G0043 Selaginella moellendorffii HOM05D000015 ORTHO05D001173 3.4e-06 54.7 67 52.2
vmacro11483 Vaccinium macrocarpon HOM05D000015 ORTHO05D001173 3.4e-06 54.7 66 53.0
HPP92_020640 Vanilla planifolia HOM05D000015 ORTHO05D001173 3.4e-06 54.7 62 56.5
MBI16_g10270_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D001173 4.4e-06 54.3 62 53.2
Manes.01G000558 Manihot esculenta HOM05D000015 ORTHO05D001173 4.4e-06 54.3 69 50.7
Sed0024676 Sechium edule HOM05D000015 ORTHO05D001173 4.4e-06 54.3 65 49.2
A02p26530 Brassica napus HOM05D000015 ORTHO05D001173 5.8e-06 53.9 66 53.0
BraA02t07656Z Brassica rapa HOM05D000015 ORTHO05D001173 5.8e-06 53.9 66 53.0
Gohir.A12G242000 Gossypium hirsutum HOM05D000015 ORTHO05D001173 5.8e-06 53.9 66 51.5
Gohir.D12G243200 Gossypium hirsutum HOM05D000015 ORTHO05D001173 5.8e-06 53.9 66 51.5
Gorai.008G260500 Gossypium raimondii HOM05D000015 ORTHO05D001173 5.8e-06 53.9 66 51.5
Potri.001G450401 Populus trichocarpa HOM05D000015 ORTHO05D001173 5.8e-06 53.9 66 53.0
Sabra11G0135500 Salix brachista HOM05D000015 ORTHO05D001173 5.8e-06 53.9 66 53.0
Aa31LG9G11430 Aethionema arabicum HOM05D000015 ORTHO05D001173 7.6e-06 53.5 66 54.5
BcaC03g16390 Brassica carinata HOM05D000015 ORTHO05D001173 7.6e-06 53.5 66 53.0
C02p42220 Brassica napus HOM05D000015 ORTHO05D001173 7.6e-06 53.5 66 53.0
Carub.0006s2928 Capsella rubella HOM05D000015 ORTHO05D001173 7.6e-06 53.5 62 58.1
Carub.0006s2929 Capsella rubella HOM05D000015 ORTHO05D001173 7.6e-06 53.5 66 54.5
CAN.G404.8 Capsicum annuum HOM05D000015 ORTHO05D001173 7.6e-06 53.5 64 50.0
MD05G1055900 Malus domestica HOM05D000015 ORTHO05D001173 7.6e-06 53.5 69 49.3
Os04g0121300 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 7.6e-06 53.5 66 50.0
Os04g0126600 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 7.6e-06 53.5 69 44.9
Os04g0127600 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 7.6e-06 53.5 58 56.9
Prupe.5G133500 Prunus persica HOM05D000015 ORTHO05D001173 7.6e-06 53.5 66 50.0
RcHm_v2.0_Chr4g0389671 Rosa chinensis HOM05D000015 ORTHO05D001173 7.6e-06 53.5 66 53.0
MSTRG.26979 Avicennia marina HOM05D000015 ORTHO05D001173 9.9e-06 53.1 62 54.8
Thhalv10006863m.g Eutrema salsugineum HOM05D000015 ORTHO05D001173 9.9e-06 53.1 66 51.5
Os04g0127300 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 9.9e-06 53.1 61 52.5
Sabra16G0304200 Salix brachista HOM05D000015 ORTHO05D001173 9.9e-06 53.1 66 51.5
Sed0012357 Sechium edule HOM05D000015 ORTHO05D001173 9.9e-06 53.1 66 47.0
TWI81G0851 Tripterygium wilfordii HOM05D000015 ORTHO05D001173 9.9e-06 53.1 66 50.0


User provided reference genes

Program Settings